Click here to switch to the map view.

The map label for this gene is recO [H]

Identifier: 187928025

GI number: 187928025

Start: 983788

End: 984609

Strand: Direct

Name: recO [H]

Synonym: Rpic_0930

Alternate gene names: 187928025

Gene position: 983788-984609 (Clockwise)

Preceding gene: 187928024

Following gene: 187928026

Centisome position: 24.95

GC content: 64.84

Gene sequence:

>822_bases
ATGGCGGGACGATCCGATCCGATTCCGGACGAGGCCGCGGAATGGCTGGCCGAGGAGGGCGTTGCCGGCGCCGCGCCGCG
CAGGAGCTTTCCTGCCGGGCGTTCCGAAACACGTGTTGCTGCGCAGCCGGCCTTCGTGCTGCACAGTTATCCGTATCGGG
AAACCAGCCTCATCATCGACGTCTTCACGCCGGACTACGGGCGCATGGCGCTGGTCGCCAAGGGGGCCAAGCGTCCGCAT
TCGGCGTTGCGTGCGGTGTTGCAGACGTTCCAGCCGCTGTCGCTGTCCTGGAGCGGTCGCGGTGATGTGCGCACGCTGAC
TCGCGCCGAGTGGGTGGGCGGCATGTTGCCGCTGGGCGGCGAGGGGCTGCTATCCGGGTTCTATCTGAACGAACTGCTCG
TCAAGTTCGTCGCCCGCGAAGACGGCCATCCGGTACTGTTCGCGCATTACGTCGAAACACTCAATAAGCTTGCCCATGGC
GAACCCGCGGCCTTCACGCTGCGGGCGTTCGAACGTGTGCTGCTGCGTGAGACCGGCTTTGCCGCGCAGCTCGATCGCTG
CATCGACGGCGAACCCGTGCAGGCCGACGCCGAATACGTCTATCACCCCGAGCGCGGCATCCGGCGGACGCTTCCCAGCG
ATCCATCGTCCTGGCCTGTGTTGCGCGGCCAGACGCTGATCGACATGGAACACGACGATTACGCCTCGCGCCCCACGACC
GCGCAGCAAAGCCGCAGCCTGATGCGTTTCCTGCTGCATTATCATTTGCATGGCACGCCGCTTTCGACGCGCCAGATCCT
GATCGACTTGCAGAAACTATGA

Upstream 100 bases:

>100_bases
GTCTGGATCAAGGTCAAGAGCGGTTGGGCCGACAACGAAGCCGGCCTGCGCGCCTACGGCTACGAATAACCACCTAGCCG
GGCCACTCTACACACGTTCG

Downstream 100 bases:

>100_bases
TCTTTCATGCCTCGCCGGGAATCATCGACCTGGGCATCAATATCGACCACGTCGCCACGCTGCGCAACGCGCGCGGCACC
ACCTACCCGGACCCGATCGC

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O [H]

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MAGRSDPIPDEAAEWLAEEGVAGAAPRRSFPAGRSETRVAAQPAFVLHSYPYRETSLIIDVFTPDYGRMALVAKGAKRPH
SALRAVLQTFQPLSLSWSGRGDVRTLTRAEWVGGMLPLGGEGLLSGFYLNELLVKFVAREDGHPVLFAHYVETLNKLAHG
EPAAFTLRAFERVLLRETGFAAQLDRCIDGEPVQADAEYVYHPERGIRRTLPSDPSSWPVLRGQTLIDMEHDDYASRPTT
AQQSRSLMRFLLHYHLHGTPLSTRQILIDLQKL

Sequences:

>Translated_273_residues
MAGRSDPIPDEAAEWLAEEGVAGAAPRRSFPAGRSETRVAAQPAFVLHSYPYRETSLIIDVFTPDYGRMALVAKGAKRPH
SALRAVLQTFQPLSLSWSGRGDVRTLTRAEWVGGMLPLGGEGLLSGFYLNELLVKFVAREDGHPVLFAHYVETLNKLAHG
EPAAFTLRAFERVLLRETGFAAQLDRCIDGEPVQADAEYVYHPERGIRRTLPSDPSSWPVLRGQTLIDMEHDDYASRPTT
AQQSRSLMRFLLHYHLHGTPLSTRQILIDLQKL
>Mature_272_residues
AGRSDPIPDEAAEWLAEEGVAGAAPRRSFPAGRSETRVAAQPAFVLHSYPYRETSLIIDVFTPDYGRMALVAKGAKRPHS
ALRAVLQTFQPLSLSWSGRGDVRTLTRAEWVGGMLPLGGEGLLSGFYLNELLVKFVAREDGHPVLFAHYVETLNKLAHGE
PAAFTLRAFERVLLRETGFAAQLDRCIDGEPVQADAEYVYHPERGIRRTLPSDPSSWPVLRGQTLIDMEHDDYASRPTTA
QQSRSLMRFLLHYHLHGTPLSTRQILIDLQKL

Specific function: Involved in DNA repair and recF pathway recombination [H]

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family [H]

Homologues:

Organism=Escherichia coli, GI2367140, Length=231, Percent_Identity=38.961038961039, Blast_Score=135, Evalue=4e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717 [H]

Pfam domain/function: PF02565 RecO; PF11967 RecO_N [H]

EC number: NA

Molecular weight: Translated: 30412; Mature: 30281

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGRSDPIPDEAAEWLAEEGVAGAAPRRSFPAGRSETRVAAQPAFVLHSYPYRETSLIID
CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCEEECCCCCCCEEEEE
VFTPDYGRMALVAKGAKRPHSALRAVLQTFQPLSLSWSGRGDVRTLTRAEWVGGMLPLGG
EECCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCCCC
EGLLSGFYLNELLVKFVAREDGHPVLFAHYVETLNKLAHGEPAAFTLRAFERVLLRETGF
CHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
AAQLDRCIDGEPVQADAEYVYHPERGIRRTLPSDPSSWPVLRGQTLIDMEHDDYASRPTT
HHHHHHHCCCCCCCCCCCEEECCCHHHHHCCCCCCCCCCEECCCEEEECCCCCCCCCCCH
AQQSRSLMRFLLHYHLHGTPLSTRQILIDLQKL
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
AGRSDPIPDEAAEWLAEEGVAGAAPRRSFPAGRSETRVAAQPAFVLHSYPYRETSLIID
CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCEEECCCCCCCEEEEE
VFTPDYGRMALVAKGAKRPHSALRAVLQTFQPLSLSWSGRGDVRTLTRAEWVGGMLPLGG
EECCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCCCC
EGLLSGFYLNELLVKFVAREDGHPVLFAHYVETLNKLAHGEPAAFTLRAFERVLLRETGF
CHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
AAQLDRCIDGEPVQADAEYVYHPERGIRRTLPSDPSSWPVLRGQTLIDMEHDDYASRPTT
HHHHHHHCCCCCCCCCCCEEECCCHHHHHCCCCCCCCCCEECCCEEEECCCCCCCCCCCH
AQQSRSLMRFLLHYHLHGTPLSTRQILIDLQKL
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]