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The map label for this gene is 187927895

Identifier: 187927895

GI number: 187927895

Start: 846611

End: 847735

Strand: Direct

Name: 187927895

Synonym: Rpic_0799

Alternate gene names: NA

Gene position: 846611-847735 (Clockwise)

Preceding gene: 187927894

Following gene: 187927899

Centisome position: 21.47

GC content: 64.27

Gene sequence:

>1125_bases
ATGTCCGATCGCCACGTCCCCCGCAAGGGACGCGGCGCCACTTCCAATCTGCAAGGCCGCTTCGAGCGCGACGAGCGCAC
GCGCGTCGATGACGGCTGGCAACCGCTTGTCGGGCACCTCGATCCGGATGACGCGCCGCCTCGCATCGAGACCAGCGTCT
CCATCGAGCGTGCGCGCTCCATCCTCAGCCATAACCAGTCGCCGGATATTCCGTTTGGGGTCTCGCTCAATCCGTATCGT
GGCTGCGAGCATGGTTGTGTGTATTGCTTTGCTCGGCCGACGCATGCGTATCTGGAGCTGTCGCCCGGGCTGGACTTCGA
GACCAAGCTGTTCGCCAAGACCAATGCCGCGGAGGTGCTGCGCGAAACGCTGGCCAAGCCCGGCTACCGCTGCGAAGCGA
TTGCGCTGGGCGTGAACACCGATGCGTATCAGCCAATCGAGCGCGAGTTGCACATCACGCGCGACGTGCTGCAGGTGCTG
CACGATTGCGATCACCCTGTCGGGCTGATCACCAAGTCGACACTGATCGAGCGCGACATCGATCTGCTCGCCCCGATGGC
GGCGAAGAATCTCGTCGTAGCCGCCGTCACAATCACCACGCTCGACGCTGATCTGGCGCGCAAGCTGGAGCCCCGCGCTG
CCACGCCATCGCGCCGCCTGCGCACGATTCGCACGCTGGCAGAGGCGGGTATTCCGGTGGGTGTCAGCGTCGCCCCGATG
GTCCCCTTCATCACCGACGACCACATGGAGCAGATTCTGGAAGCCGCGCACGAGGCAGGCGCCACGTACGCGAGCTATAT
CGTGCTGCGCTTGCCAAACGAGCTGGACGCGGTGTTTCAGGATTGGCTGATGGCGCATTTCCCCGACCGCGCGCAACGCG
TGATGAATCGCATCCGCGATCTGCACGGCGGGCACGATTACAAAGCGGATTTCGCCACGCGCATGCGGGGCACCGGCATC
TGGGCCGACTTGTTGCGGCAGCGTTTCTACAAGGCCGCCGACAGGCTCGGCTTCAGCTACCACCGCTACAACGAACGGGT
GCTCGACACCTCGCAGTTCAAGCCGCCCACGCGTGCCCTCAAACCGCGAAAGCCGGTCGACGAGCGCCAGGGCAGTTTGT
TTTGA

Upstream 100 bases:

>100_bases
CTCGATCCCGAGGCGTAGCAGGCGTCACCCGCAGCGCGGCGGGAGCGTATGCGATAGGATCAGCGAGCCCCCGCATCCAT
TCTGGCCCGCTGTGTCCGAT

Downstream 100 bases:

>100_bases
CTACTGCGACAGCTCTTTCGCTGCCTGCACCTGCGTTTCGAAATAGGTCTGGAAGGTGATGGCCAAGCCGGCCATCAGCA
GGCCCGTGCCGATCATCAGC

Product: Radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 373

Protein sequence:

>374_residues
MSDRHVPRKGRGATSNLQGRFERDERTRVDDGWQPLVGHLDPDDAPPRIETSVSIERARSILSHNQSPDIPFGVSLNPYR
GCEHGCVYCFARPTHAYLELSPGLDFETKLFAKTNAAEVLRETLAKPGYRCEAIALGVNTDAYQPIERELHITRDVLQVL
HDCDHPVGLITKSTLIERDIDLLAPMAAKNLVVAAVTITTLDADLARKLEPRAATPSRRLRTIRTLAEAGIPVGVSVAPM
VPFITDDHMEQILEAAHEAGATYASYIVLRLPNELDAVFQDWLMAHFPDRAQRVMNRIRDLHGGHDYKADFATRMRGTGI
WADLLRQRFYKAADRLGFSYHRYNERVLDTSQFKPPTRALKPRKPVDERQGSLF

Sequences:

>Translated_374_residues
MSDRHVPRKGRGATSNLQGRFERDERTRVDDGWQPLVGHLDPDDAPPRIETSVSIERARSILSHNQSPDIPFGVSLNPYR
GCEHGCVYCFARPTHAYLELSPGLDFETKLFAKTNAAEVLRETLAKPGYRCEAIALGVNTDAYQPIERELHITRDVLQVL
HDCDHPVGLITKSTLIERDIDLLAPMAAKNLVVAAVTITTLDADLARKLEPRAATPSRRLRTIRTLAEAGIPVGVSVAPM
VPFITDDHMEQILEAAHEAGATYASYIVLRLPNELDAVFQDWLMAHFPDRAQRVMNRIRDLHGGHDYKADFATRMRGTGI
WADLLRQRFYKAADRLGFSYHRYNERVLDTSQFKPPTRALKPRKPVDERQGSLF
>Mature_373_residues
SDRHVPRKGRGATSNLQGRFERDERTRVDDGWQPLVGHLDPDDAPPRIETSVSIERARSILSHNQSPDIPFGVSLNPYRG
CEHGCVYCFARPTHAYLELSPGLDFETKLFAKTNAAEVLRETLAKPGYRCEAIALGVNTDAYQPIERELHITRDVLQVLH
DCDHPVGLITKSTLIERDIDLLAPMAAKNLVVAAVTITTLDADLARKLEPRAATPSRRLRTIRTLAEAGIPVGVSVAPMV
PFITDDHMEQILEAAHEAGATYASYIVLRLPNELDAVFQDWLMAHFPDRAQRVMNRIRDLHGGHDYKADFATRMRGTGIW
ADLLRQRFYKAADRLGFSYHRYNERVLDTSQFKPPTRALKPRKPVDERQGSLF

Specific function: Unknown

COG id: COG1533

COG function: function code L; DNA repair photolyase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 42147; Mature: 42016

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDRHVPRKGRGATSNLQGRFERDERTRVDDGWQPLVGHLDPDDAPPRIETSVSIERARS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHH
ILSHNQSPDIPFGVSLNPYRGCEHGCVYCFARPTHAYLELSPGLDFETKLFAKTNAAEVL
HHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCHHHHHCCCHHHHH
RETLAKPGYRCEAIALGVNTDAYQPIERELHITRDVLQVLHDCDHPVGLITKSTLIERDI
HHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
DLLAPMAAKNLVVAAVTITTLDADLARKLEPRAATPSRRLRTIRTLAEAGIPVGVSVAPM
HHHHHHHHCCEEEEEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHCC
VPFITDDHMEQILEAAHEAGATYASYIVLRLPNELDAVFQDWLMAHFPDRAQRVMNRIRD
CCCCCHHHHHHHHHHHHHCCCHHHEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
LHGGHDYKADFATRMRGTGIWADLLRQRFYKAADRLGFSYHRYNERVLDTSQFKPPTRAL
HCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCHHHCCCCCCCCHHCC
KPRKPVDERQGSLF
CCCCCCCCCCCCCC
>Mature Secondary Structure 
SDRHVPRKGRGATSNLQGRFERDERTRVDDGWQPLVGHLDPDDAPPRIETSVSIERARS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHH
ILSHNQSPDIPFGVSLNPYRGCEHGCVYCFARPTHAYLELSPGLDFETKLFAKTNAAEVL
HHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCHHHHHCCCHHHHH
RETLAKPGYRCEAIALGVNTDAYQPIERELHITRDVLQVLHDCDHPVGLITKSTLIERDI
HHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
DLLAPMAAKNLVVAAVTITTLDADLARKLEPRAATPSRRLRTIRTLAEAGIPVGVSVAPM
HHHHHHHHCCEEEEEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHCC
VPFITDDHMEQILEAAHEAGATYASYIVLRLPNELDAVFQDWLMAHFPDRAQRVMNRIRD
CCCCCHHHHHHHHHHHHHCCCHHHEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
LHGGHDYKADFATRMRGTGIWADLLRQRFYKAADRLGFSYHRYNERVLDTSQFKPPTRAL
HCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCHHHCCCCCCCCHHCC
KPRKPVDERQGSLF
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]