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The map label for this gene is fimD [H]

Identifier: 187927859

GI number: 187927859

Start: 803619

End: 806177

Strand: Direct

Name: fimD [H]

Synonym: Rpic_0763

Alternate gene names: 187927859

Gene position: 803619-806177 (Clockwise)

Preceding gene: 187927858

Following gene: 187927860

Centisome position: 20.38

GC content: 60.22

Gene sequence:

>2559_bases
ATGTCTAAACGCCCGACCACCAAACCGGTCCCCAGAAAGATTGATGGAAAAGCCTTCGCTGCTCGTCCCCGAGCAAACCC
GCTTTACTTGGCTTTGTGTCTGGCGGTTTTCAATAGTGCGCGCGCGGCGGAGGGGGAAACCCTTGTCGCACAGGCTGCCC
CGACGCTGCTTGCTTTCAATACGAACTTTTTGCATGGCCAGGGCCGTCCGGCAGATCTGAGCGCCGTACTTTCTTCCGGA
AACAGCGTGCCGCCCGGCACGTACCGTGTCGAGGTGCAGGTCAATGGAAACTTGGTGGGGCGGCGCGACGTCGACTTCCA
TCAAGAGGGTGGCAAGGGCAAGGTGCGTCCATGCCTCACCGCGCAGATGCTCCAGGACTTTGGCGTCGACCTGACTGCCA
TTACTCCAGCCCTTGATCTCAATAGCCAAGCGTGTCTGGATTTGCCGCAGCTAATGGACCAAGCGGTCGTCGACTTCGAC
GCTGGCCGGCTGCAACTGAACCTGAGCATTCCCCAGGCGTTTCTGTCGCGCGCTGCACGTGGCTATGTGGATCCGGCCTT
GTGGGACGAGGGCGTCACCGCTGGCTACGTCAACTACCAGTTCAGCGGAAACTACGGCCACGGCCGCGTTGGCAATGACA
GCAGCAGCTATTATCTTGGCCTGCAGAATGGCGTGAATATTGGCCGTTGGCGTCTGCGCAACGAATCTGCGTTGAGCGGA
AGCAATGATGGCCAGACCCGCTTCAAAAGCAATCGCACGTTGTTGCAACGCGACGTCGACGCCATCAAGGGGCAACTGAC
GCTTGGCGAGCAATACTCCGACGCGACGCTATTCGACAGCGTACGCTTCCGCGGTGTGCAGGTCAGTTCGGACGACGCGA
TGCTGCCGGATAGCGAGCGCGGCTATGCACCGGTGGTGCGTGGGCAGGCTGCGACGAATGCTGTCGTGGAGGTTCGCCAG
AGCGGCTACGTGCTATATCGCGCCAACGTGCCGCCGGGGCCATTCCAACTGACCGATATTTTCCCGACCGGCTCAAACGG
CGACCTTGAAATCACCGTGATCGAAGCCGATGGCACCAGGCGCGTTACTCACCAAGCCTTTTCGAGCTTGCCCCTGATGC
TCCGCAAGGGGCGATTGAAGTATGCATTTGCGGCCGGGAAGTACGATGGGGATCAAACGGCCTCACCTAAGCTCGTGGCC
GGATCGCTTGTTTATGGCTTCACGGACAACAGCACCGTGGCGGGCGGCTTCCAAGCGTCGCGGGATTTCCAGGCCCTCAA
CATGGGCGTTGGTACCAACACACCGATCGGTGCGCTGTCGCTAGACATCACGCAATCGAGCAGCCGCGTGCAGGGCAAGC
GCGATACCGGCCAAAGTGTGCGTGTCCTGTATGCCAAGACTTTCACGCGGACGAACACCAACTTCACGCTGGCGGCATAT
CGGTATTCCACGTCGGGCTATCGCACGTTTAGCGATCACGTCAACGACCTCGGCAACGCGGGCGTGCAAGCTGGTCGTAG
TCGCTCGCGCATCGACTTGACGACCAGTCAGGACTTGGGTGGGCCGCAACGTGAATATGGCAGCGTCTATCTGAACATCA
GCCAGCAGACGTATTGGAATCAGCCGGGCTCCAGCCGCAGCATTAGCGTCGGCTATGGCAACACCTGGAAGCGACTCAGC
TACAACTTGAGCCTGAGCCAGACCAAAGACAGTCGATTTGGCAACAACGGCAGCAATACGCAGGTCATGCTGACGATGTC
GATCCCGCTTGGAGGCAAGCTGCACTCCCAGCGCGCATACACCAACGTCAGCAACGACAGCAACGGCGGCACGAATATTC
AGAGCGGCCTGAGCGGTTTCGCCAGCGAAAAAACGTCTTACGCCATGCAAGCCGGTTATACCAACGGCGGGCGAGGTGCA
ACGGGCGGTGCCAGCATTACGCACGAGGCCGATGCAGGCCAGCTCTCGGCCAACGTCAACGTCGCCAATGACTACCAATC
GGCCAGCATCGGGGCCATGGGCGCGGTCGTGGTCCATGGCGGCGGTGTCAACCTGAGCCGCACGGTTGGCGACACCTTCG
CTTTGATGAAGATGGAGGGCCTTCGGGGTGTCGATGTTCGCACCGAGGCAGGCACCTCAGTCGGTCGCAACGGATATGCC
GTCGTGTCCTATGCGCAGCCGTACCGCCTGAATGCACTGCGCCCCGACACGCATAACCTCGGTGCCGACATTGAACTGAC
AGACACCGTTAAACAGGTGGTGCCGCGTCGTGGCGCCATTGTGCAGGCGACCTTCAAGGGTTACAGCGGCCAGCGTGCGC
AGTTCACCTTCCAGCAGGCAGACGGCAAGCCCGTACCGTTTGGCGCCAGCGTGGAAGACGCCCAAACCGGCAGGCAGTTG
GGCATTGCAGACCCGAACGGCAGTGCCTTTGTGCTGCTTGGCCAGGAACAAGGCACCTTGTCGGTGAAATGGAAAGAAGG
CCAATGCCAGGCACCCTATGCGTTGCCGAAAGCAGAAGCTGGCCGGAACTACCAGCGGCAGACGTTGCGTTGTAGATAG

Upstream 100 bases:

>100_bases
TTCTATCCAGCCTGCAGTGGTTGGATTAGCCCGCGCCCCTTCGAAGCGGAGCTTGCCCATGTGACACCCCTGATTCTCAA
GGCCCAAAGCGAGCATTGCG

Downstream 100 bases:

>100_bases
CCACCGGGCTCTCGAATCCTCCGCGGCCATGGATACATGGTCCATCGCATATAAGCAAAACTTGGAAAGAATCGTCGATG
CAAAAAAATCTATACCGCCT

Product: fimbrial biogenesis outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 852; Mature: 851

Protein sequence:

>852_residues
MSKRPTTKPVPRKIDGKAFAARPRANPLYLALCLAVFNSARAAEGETLVAQAAPTLLAFNTNFLHGQGRPADLSAVLSSG
NSVPPGTYRVEVQVNGNLVGRRDVDFHQEGGKGKVRPCLTAQMLQDFGVDLTAITPALDLNSQACLDLPQLMDQAVVDFD
AGRLQLNLSIPQAFLSRAARGYVDPALWDEGVTAGYVNYQFSGNYGHGRVGNDSSSYYLGLQNGVNIGRWRLRNESALSG
SNDGQTRFKSNRTLLQRDVDAIKGQLTLGEQYSDATLFDSVRFRGVQVSSDDAMLPDSERGYAPVVRGQAATNAVVEVRQ
SGYVLYRANVPPGPFQLTDIFPTGSNGDLEITVIEADGTRRVTHQAFSSLPLMLRKGRLKYAFAAGKYDGDQTASPKLVA
GSLVYGFTDNSTVAGGFQASRDFQALNMGVGTNTPIGALSLDITQSSSRVQGKRDTGQSVRVLYAKTFTRTNTNFTLAAY
RYSTSGYRTFSDHVNDLGNAGVQAGRSRSRIDLTTSQDLGGPQREYGSVYLNISQQTYWNQPGSSRSISVGYGNTWKRLS
YNLSLSQTKDSRFGNNGSNTQVMLTMSIPLGGKLHSQRAYTNVSNDSNGGTNIQSGLSGFASEKTSYAMQAGYTNGGRGA
TGGASITHEADAGQLSANVNVANDYQSASIGAMGAVVVHGGGVNLSRTVGDTFALMKMEGLRGVDVRTEAGTSVGRNGYA
VVSYAQPYRLNALRPDTHNLGADIELTDTVKQVVPRRGAIVQATFKGYSGQRAQFTFQQADGKPVPFGASVEDAQTGRQL
GIADPNGSAFVLLGQEQGTLSVKWKEGQCQAPYALPKAEAGRNYQRQTLRCR

Sequences:

>Translated_852_residues
MSKRPTTKPVPRKIDGKAFAARPRANPLYLALCLAVFNSARAAEGETLVAQAAPTLLAFNTNFLHGQGRPADLSAVLSSG
NSVPPGTYRVEVQVNGNLVGRRDVDFHQEGGKGKVRPCLTAQMLQDFGVDLTAITPALDLNSQACLDLPQLMDQAVVDFD
AGRLQLNLSIPQAFLSRAARGYVDPALWDEGVTAGYVNYQFSGNYGHGRVGNDSSSYYLGLQNGVNIGRWRLRNESALSG
SNDGQTRFKSNRTLLQRDVDAIKGQLTLGEQYSDATLFDSVRFRGVQVSSDDAMLPDSERGYAPVVRGQAATNAVVEVRQ
SGYVLYRANVPPGPFQLTDIFPTGSNGDLEITVIEADGTRRVTHQAFSSLPLMLRKGRLKYAFAAGKYDGDQTASPKLVA
GSLVYGFTDNSTVAGGFQASRDFQALNMGVGTNTPIGALSLDITQSSSRVQGKRDTGQSVRVLYAKTFTRTNTNFTLAAY
RYSTSGYRTFSDHVNDLGNAGVQAGRSRSRIDLTTSQDLGGPQREYGSVYLNISQQTYWNQPGSSRSISVGYGNTWKRLS
YNLSLSQTKDSRFGNNGSNTQVMLTMSIPLGGKLHSQRAYTNVSNDSNGGTNIQSGLSGFASEKTSYAMQAGYTNGGRGA
TGGASITHEADAGQLSANVNVANDYQSASIGAMGAVVVHGGGVNLSRTVGDTFALMKMEGLRGVDVRTEAGTSVGRNGYA
VVSYAQPYRLNALRPDTHNLGADIELTDTVKQVVPRRGAIVQATFKGYSGQRAQFTFQQADGKPVPFGASVEDAQTGRQL
GIADPNGSAFVLLGQEQGTLSVKWKEGQCQAPYALPKAEAGRNYQRQTLRCR
>Mature_851_residues
SKRPTTKPVPRKIDGKAFAARPRANPLYLALCLAVFNSARAAEGETLVAQAAPTLLAFNTNFLHGQGRPADLSAVLSSGN
SVPPGTYRVEVQVNGNLVGRRDVDFHQEGGKGKVRPCLTAQMLQDFGVDLTAITPALDLNSQACLDLPQLMDQAVVDFDA
GRLQLNLSIPQAFLSRAARGYVDPALWDEGVTAGYVNYQFSGNYGHGRVGNDSSSYYLGLQNGVNIGRWRLRNESALSGS
NDGQTRFKSNRTLLQRDVDAIKGQLTLGEQYSDATLFDSVRFRGVQVSSDDAMLPDSERGYAPVVRGQAATNAVVEVRQS
GYVLYRANVPPGPFQLTDIFPTGSNGDLEITVIEADGTRRVTHQAFSSLPLMLRKGRLKYAFAAGKYDGDQTASPKLVAG
SLVYGFTDNSTVAGGFQASRDFQALNMGVGTNTPIGALSLDITQSSSRVQGKRDTGQSVRVLYAKTFTRTNTNFTLAAYR
YSTSGYRTFSDHVNDLGNAGVQAGRSRSRIDLTTSQDLGGPQREYGSVYLNISQQTYWNQPGSSRSISVGYGNTWKRLSY
NLSLSQTKDSRFGNNGSNTQVMLTMSIPLGGKLHSQRAYTNVSNDSNGGTNIQSGLSGFASEKTSYAMQAGYTNGGRGAT
GGASITHEADAGQLSANVNVANDYQSASIGAMGAVVVHGGGVNLSRTVGDTFALMKMEGLRGVDVRTEAGTSVGRNGYAV
VSYAQPYRLNALRPDTHNLGADIELTDTVKQVVPRRGAIVQATFKGYSGQRAQFTFQQADGKPVPFGASVEDAQTGRQLG
IADPNGSAFVLLGQEQGTLSVKWKEGQCQAPYALPKAEAGRNYQRQTLRCR

Specific function: Involved in the export and assembly of fimA fimbrial subunits across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1790772, Length=842, Percent_Identity=35.1543942992874, Blast_Score=480, Evalue=1e-136,
Organism=Escherichia coli, GI1787172, Length=824, Percent_Identity=35.8009708737864, Blast_Score=435, Evalue=1e-123,
Organism=Escherichia coli, GI1789533, Length=781, Percent_Identity=34.1869398207426, Blast_Score=427, Evalue=1e-120,
Organism=Escherichia coli, GI1786744, Length=883, Percent_Identity=33.1823329558324, Blast_Score=424, Evalue=1e-119,
Organism=Escherichia coli, GI1786332, Length=839, Percent_Identity=31.3468414779499, Blast_Score=385, Evalue=1e-108,
Organism=Escherichia coli, GI1788427, Length=821, Percent_Identity=30.4506699147381, Blast_Score=356, Evalue=3e-99,
Organism=Escherichia coli, GI87081778, Length=809, Percent_Identity=26.4524103831891, Blast_Score=254, Evalue=1e-68,
Organism=Escherichia coli, GI1789610, Length=820, Percent_Identity=24.7560975609756, Blast_Score=167, Evalue=2e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 91309; Mature: 91178

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKRPTTKPVPRKIDGKAFAARPRANPLYLALCLAVFNSARAAEGETLVAQAAPTLLAFN
CCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEE
TNFLHGQGRPADLSAVLSSGNSVPPGTYRVEVQVNGNLVGRRDVDFHQEGGKGKVRPCLT
CCEECCCCCCHHHHHHHHCCCCCCCCEEEEEEEECCEEEECCCCCCCCCCCCCCCCHHHH
AQMLQDFGVDLTAITPALDLNSQACLDLPQLMDQAVVDFDAGRLQLNLSIPQAFLSRAAR
HHHHHHHCCEEEEECCCCCCCCHHHHCHHHHHHHHHEECCCCEEEEEEECHHHHHHHHHC
GYVDPALWDEGVTAGYVNYQFSGNYGHGRVGNDSSSYYLGLQNGVNIGRWRLRNESALSG
CCCCHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCC
SNDGQTRFKSNRTLLQRDVDAIKGQLTLGEQYSDATLFDSVRFRGVQVSSDDAMLPDSER
CCCCCHHECCCCHHHHHHHHHHCCEEEECCCCCCCHHHHHHEEEEEEECCCCCCCCCCCC
GYAPVVRGQAATNAVVEVRQSGYVLYRANVPPGPFQLTDIFPTGSNGDLEITVIEADGTR
CCCCEECCCHHHHHHHEECCCCEEEEECCCCCCCEEEEEEEECCCCCCEEEEEEECCCCC
RVTHQAFSSLPLMLRKGRLKYAFAAGKYDGDQTASPKLVAGSLVYGFTDNSTVAGGFQAS
HHHHHHHHCCCHHHHCCCEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCC
RDFQALNMGVGTNTPIGALSLDITQSSSRVQGKRDTGQSVRVLYAKTFTRTNTNFTLAAY
CCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEE
RYSTSGYRTFSDHVNDLGNAGVQAGRSRSRIDLTTSQDLGGPQREYGSVYLNISQQTYWN
EECCCCCEEHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCEECC
QPGSSRSISVGYGNTWKRLSYNLSLSQTKDSRFGNNGSNTQVMLTMSIPLGGKLHSQRAY
CCCCCCEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHC
TNVSNDSNGGTNIQSGLSGFASEKTSYAMQAGYTNGGRGATGGASITHEADAGQLSANVN
CCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCEEEEEEE
VANDYQSASIGAMGAVVVHGGGVNLSRTVGDTFALMKMEGLRGVDVRTEAGTSVGRNGYA
ECCCCCCCCCCCEEEEEEECCCCEEEHHCCCEEEEEEECCCCCCEEECCCCCCCCCCCEE
VVSYAQPYRLNALRPDTHNLGADIELTDTVKQVVPRRGAIVQATFKGYSGQRAQFTFQQA
EEEECCCEEECCCCCCCCCCCCCEEEHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEECC
DGKPVPFGASVEDAQTGRQLGIADPNGSAFVLLGQEQGTLSVKWKEGQCQAPYALPKAEA
CCCCCCCCCCCCHHHCCCEEECCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCHHC
GRNYQRQTLRCR
CCCCHHHHCCCC
>Mature Secondary Structure 
SKRPTTKPVPRKIDGKAFAARPRANPLYLALCLAVFNSARAAEGETLVAQAAPTLLAFN
CCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEE
TNFLHGQGRPADLSAVLSSGNSVPPGTYRVEVQVNGNLVGRRDVDFHQEGGKGKVRPCLT
CCEECCCCCCHHHHHHHHCCCCCCCCEEEEEEEECCEEEECCCCCCCCCCCCCCCCHHHH
AQMLQDFGVDLTAITPALDLNSQACLDLPQLMDQAVVDFDAGRLQLNLSIPQAFLSRAAR
HHHHHHHCCEEEEECCCCCCCCHHHHCHHHHHHHHHEECCCCEEEEEEECHHHHHHHHHC
GYVDPALWDEGVTAGYVNYQFSGNYGHGRVGNDSSSYYLGLQNGVNIGRWRLRNESALSG
CCCCHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCC
SNDGQTRFKSNRTLLQRDVDAIKGQLTLGEQYSDATLFDSVRFRGVQVSSDDAMLPDSER
CCCCCHHECCCCHHHHHHHHHHCCEEEECCCCCCCHHHHHHEEEEEEECCCCCCCCCCCC
GYAPVVRGQAATNAVVEVRQSGYVLYRANVPPGPFQLTDIFPTGSNGDLEITVIEADGTR
CCCCEECCCHHHHHHHEECCCCEEEEECCCCCCCEEEEEEEECCCCCCEEEEEEECCCCC
RVTHQAFSSLPLMLRKGRLKYAFAAGKYDGDQTASPKLVAGSLVYGFTDNSTVAGGFQAS
HHHHHHHHCCCHHHHCCCEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCC
RDFQALNMGVGTNTPIGALSLDITQSSSRVQGKRDTGQSVRVLYAKTFTRTNTNFTLAAY
CCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEE
RYSTSGYRTFSDHVNDLGNAGVQAGRSRSRIDLTTSQDLGGPQREYGSVYLNISQQTYWN
EECCCCCEEHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCEECC
QPGSSRSISVGYGNTWKRLSYNLSLSQTKDSRFGNNGSNTQVMLTMSIPLGGKLHSQRAY
CCCCCCEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHC
TNVSNDSNGGTNIQSGLSGFASEKTSYAMQAGYTNGGRGATGGASITHEADAGQLSANVN
CCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCEEEEEEE
VANDYQSASIGAMGAVVVHGGGVNLSRTVGDTFALMKMEGLRGVDVRTEAGTSVGRNGYA
ECCCCCCCCCCCEEEEEEECCCCEEEHHCCCEEEEEEECCCCCCEEECCCCCCCCCCCEE
VVSYAQPYRLNALRPDTHNLGADIELTDTVKQVVPRRGAIVQATFKGYSGQRAQFTFQQA
EEEECCCEEECCCCCCCCCCCCCEEEHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEECC
DGKPVPFGASVEDAQTGRQLGIADPNGSAFVLLGQEQGTLSVKWKEGQCQAPYALPKAEA
CCCCCCCCCCCCHHHCCCEEECCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCHHC
GRNYQRQTLRCR
CCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1970114; 7610040; 9278503 [H]