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The map label for this gene is soxC [H]

Identifier: 187927791

GI number: 187927791

Start: 732997

End: 734169

Strand: Direct

Name: soxC [H]

Synonym: Rpic_0695

Alternate gene names: 187927791

Gene position: 732997-734169 (Clockwise)

Preceding gene: 187927790

Following gene: 187927792

Centisome position: 18.59

GC content: 65.05

Gene sequence:

>1173_bases
ATGAAGCTCGACGATCTGCATCAACTCCCCGACCTTACGCATCTGCTGGCTGAACTGGCGGCCACCGCTGCGCAGCGCGA
CCAGCAAGGCGGCCATGCCGCGCACGAAAAAGCTGCGATTTCGCGCGCAGGTTTGCTGCCGCTGGTCATCCCTACGCAGT
ACGGCGGAACCGGCGTCGGTTGGGAGGACGCCTTTGCCACGGTCCGTGCTATTGCGGCGGTCGACAGCTCGCTTGGGCAC
TTGCTCGCTTTCCAGTATCTGCAGACTGCGACCGTCTATCTGTACGGCTCCGACGCGCAACGCGAACGCTTCCTGCGTCC
GACCGCCGAGCTGGGCTGGTGGTGGGGCAACGCCGTCAATCCGCTCGACCATCGCCTGCGTGCCCAGCGCTCGGGCAGCG
GTTGGCTGCTCGATGGCGAAAAGGGTTTCTGTTCCGGCACGCTCGGTTCCGACGTGATGGTCGTGTCTGCCCACGACGCG
GCCAGCGGCAACCCCGTTGTGGCGGTGGTGCCGACAGCGCGCTATGGCATTACGGTGCGCGACGACTGGCATCCGATCGG
GCAGCGCCAGACCGACAGCGCCTCCGTGCAATTCCGGCATGTGCAGGTCAGCGAAGATGAAGTGCTGGTCCGCCCCGAGG
TCGTCCTCACGCCATATCAAACGGTGCGTTCCTGTATCGCGCAGAACGTATTGGTGAATCTCTACACCGGCATTGCCGCA
GGCGCGCTGGACGAGGCACGCAAGCACACGCTGCAATCGTCGCGGCCATGGATCACCTCGGGTGTGGAGCGCGCGGCGGA
CGATCCTTACCAAATTCACCGCTTTGGCGAGATGCGCGTGCAATTGCTGGCTGCAGAAGCGCTGGCCGATCGCGCCATCC
AACGGTTGGATCGCGCGTGGCGTAAAGGCGCCGCGCTGAGCGCCGACGAGCGGGCCGAGGTCTCGCTTGCCACGGCCGAA
GCCAAGGTGTTGGCACATCGTGCCGCATTGTTCGTCGCCCAGGAATTGTTTGAGGCGACAGGCGCACGTTCGACCAAGGC
CGCGCTGGCGCTGGACCGCTTCTGGCGCAACGCGCGCACGCATACGCTGCACGACCCGCTTGACTACAAATTGCGCGCCA
TCGGCCGCTACGCGCTGGAAGGCATCCTGCCCGACGCCACCATCTACGGCTAA

Upstream 100 bases:

>100_bases
CGCGTGCTGGATATGCGTATGCGGATTGCTTCCTTCAAGGCGGTCGGGGCCATCCGTATAGTGCCTGCACCGGATGGCGT
CTCCGACGCGAGGCAAGCGC

Downstream 100 bases:

>100_bases
GCGCCTATCGATCTGCACATTCCTTCGTTGGCACACGACTGCGGCGGGCGGTGTAATGTGAAATTCGTCTATTGCCGCGC
GCTTACATCATGTCCGACGC

Product: acyl-CoA dehydrogenase type 2 domain

Products: NA

Alternate protein names: DBT sulfur dioxygenase [H]

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MKLDDLHQLPDLTHLLAELAATAAQRDQQGGHAAHEKAAISRAGLLPLVIPTQYGGTGVGWEDAFATVRAIAAVDSSLGH
LLAFQYLQTATVYLYGSDAQRERFLRPTAELGWWWGNAVNPLDHRLRAQRSGSGWLLDGEKGFCSGTLGSDVMVVSAHDA
ASGNPVVAVVPTARYGITVRDDWHPIGQRQTDSASVQFRHVQVSEDEVLVRPEVVLTPYQTVRSCIAQNVLVNLYTGIAA
GALDEARKHTLQSSRPWITSGVERAADDPYQIHRFGEMRVQLLAAEALADRAIQRLDRAWRKGAALSADERAEVSLATAE
AKVLAHRAALFVAQELFEATGARSTKAALALDRFWRNARTHTLHDPLDYKLRAIGRYALEGILPDATIYG

Sequences:

>Translated_390_residues
MKLDDLHQLPDLTHLLAELAATAAQRDQQGGHAAHEKAAISRAGLLPLVIPTQYGGTGVGWEDAFATVRAIAAVDSSLGH
LLAFQYLQTATVYLYGSDAQRERFLRPTAELGWWWGNAVNPLDHRLRAQRSGSGWLLDGEKGFCSGTLGSDVMVVSAHDA
ASGNPVVAVVPTARYGITVRDDWHPIGQRQTDSASVQFRHVQVSEDEVLVRPEVVLTPYQTVRSCIAQNVLVNLYTGIAA
GALDEARKHTLQSSRPWITSGVERAADDPYQIHRFGEMRVQLLAAEALADRAIQRLDRAWRKGAALSADERAEVSLATAE
AKVLAHRAALFVAQELFEATGARSTKAALALDRFWRNARTHTLHDPLDYKLRAIGRYALEGILPDATIYG
>Mature_390_residues
MKLDDLHQLPDLTHLLAELAATAAQRDQQGGHAAHEKAAISRAGLLPLVIPTQYGGTGVGWEDAFATVRAIAAVDSSLGH
LLAFQYLQTATVYLYGSDAQRERFLRPTAELGWWWGNAVNPLDHRLRAQRSGSGWLLDGEKGFCSGTLGSDVMVVSAHDA
ASGNPVVAVVPTARYGITVRDDWHPIGQRQTDSASVQFRHVQVSEDEVLVRPEVVLTPYQTVRSCIAQNVLVNLYTGIAA
GALDEARKHTLQSSRPWITSGVERAADDPYQIHRFGEMRVQLLAAEALADRAIQRLDRAWRKGAALSADERAEVSLATAE
AKVLAHRAALFVAQELFEATGARSTKAALALDRFWRNARTHTLHDPLDYKLRAIGRYALEGILPDATIYG

Specific function: Part of a pathway to remove covalently bound sulfur from dibenzothiophene (DBT) without breaking carbon-carbon bonds. Sulfur dioxygenase which converts DBT to DBT-sulfone (DBTO2 or DBT 5,5-dioxide) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 42605; Mature: 42605

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLDDLHQLPDLTHLLAELAATAAQRDQQGGHAAHEKAAISRAGLLPLVIPTQYGGTGVG
CCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCC
WEDAFATVRAIAAVDSSLGHLLAFQYLQTATVYLYGSDAQRERFLRPTAELGWWWGNAVN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHCCCHHHHCCCCCCCCC
PLDHRLRAQRSGSGWLLDGEKGFCSGTLGSDVMVVSAHDAASGNPVVAVVPTARYGITVR
HHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCEEEEEEC
DDWHPIGQRQTDSASVQFRHVQVSEDEVLVRPEVVLTPYQTVRSCIAQNVLVNLYTGIAA
CCCCCCCCCCCCCCCEEEEEEEECCCCEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHH
GALDEARKHTLQSSRPWITSGVERAADDPYQIHRFGEMRVQLLAAEALADRAIQRLDRAW
HHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKGAALSADERAEVSLATAEAKVLAHRAALFVAQELFEATGARSTKAALALDRFWRNART
HCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
HTLHDPLDYKLRAIGRYALEGILPDATIYG
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKLDDLHQLPDLTHLLAELAATAAQRDQQGGHAAHEKAAISRAGLLPLVIPTQYGGTGVG
CCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCC
WEDAFATVRAIAAVDSSLGHLLAFQYLQTATVYLYGSDAQRERFLRPTAELGWWWGNAVN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHCCCHHHHCCCCCCCCC
PLDHRLRAQRSGSGWLLDGEKGFCSGTLGSDVMVVSAHDAASGNPVVAVVPTARYGITVR
HHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCEEEEEEC
DDWHPIGQRQTDSASVQFRHVQVSEDEVLVRPEVVLTPYQTVRSCIAQNVLVNLYTGIAA
CCCCCCCCCCCCCCCEEEEEEEECCCCEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHH
GALDEARKHTLQSSRPWITSGVERAADDPYQIHRFGEMRVQLLAAEALADRAIQRLDRAW
HHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKGAALSADERAEVSLATAEAKVLAHRAALFVAQELFEATGARSTKAALALDRFWRNART
HCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
HTLHDPLDYKLRAIGRYALEGILPDATIYG
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961424; 7574582 [H]