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The map label for this gene is pal [H]

Identifier: 187927781

GI number: 187927781

Start: 723425

End: 723946

Strand: Direct

Name: pal [H]

Synonym: Rpic_0685

Alternate gene names: 187927781

Gene position: 723425-723946 (Clockwise)

Preceding gene: 187927780

Following gene: 187927782

Centisome position: 18.35

GC content: 65.13

Gene sequence:

>522_bases
ATGTCGAAGTCCCAAACCATGATCAAACTTGCAGCCATTGCCGCGCTGCTGGCCCTGGGCGCTTGCAGCTCGGGCGTGAA
GCTCGATGACACCGCCAAGAACGGGACGGGCGGTGCCGCTGGCACGGGCGCTGACGCCCGCACGGTGACCCCGGTGGACG
TGGGCCGCGACGAGCTGACCGACCCGAACAGCCCGCTGGCCAAGCGCAGCATCTACTTCGATTTCGACAGCTACTCGGTC
AAGTCGGAGTACCAAGGCCTGCTGGGTCAGCACTCGCGCTACCTGCAATCGCACAACCAGCGCAAGGTCCTGATCCAGGG
CAACACCGACGAGCGCGGCACGAGCGAATACAACCTCGCACTGGGCCAGAAGCGTGCCGAGGCCGTGCGTCGCGCCCTGT
CGTCGATGGGCGTGCCTGACAGCCAGATGGAAGCCGTGAGCCTGGGTAAGGAAAAGCCGCAAGCGACCGGCCACGACGAA
GACTCGTGGGCACAGAACCGCCGCGCCGACATCGTCTACTAA

Upstream 100 bases:

>100_bases
GTACGCGTCAGGTTCTTTCCCTCCAGGCCGGCGAAGTTCGTGAGCCGGCGTGGGGTCCTTTCATGCAATAACGAAGCTGT
TCCAACAGGAGAAATCGGAC

Downstream 100 bases:

>100_bases
TCGGTATGGTTTGAAGTGGAACGCGCCGGCTGCGAGGTTGCGGCCGGCGTTCTTACGTTGGCAATCACATGAATACGATG
ATGAAACAGCGCGCTTATGG

Product: peptidoglycan-associated lipoprotein

Products: NA

Alternate protein names: OMP P6; P6-like; Peptidoglycan-associated lipoprotein [H]

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MSKSQTMIKLAAIAALLALGACSSGVKLDDTAKNGTGGAAGTGADARTVTPVDVGRDELTDPNSPLAKRSIYFDFDSYSV
KSEYQGLLGQHSRYLQSHNQRKVLIQGNTDERGTSEYNLALGQKRAEAVRRALSSMGVPDSQMEAVSLGKEKPQATGHDE
DSWAQNRRADIVY

Sequences:

>Translated_173_residues
MSKSQTMIKLAAIAALLALGACSSGVKLDDTAKNGTGGAAGTGADARTVTPVDVGRDELTDPNSPLAKRSIYFDFDSYSV
KSEYQGLLGQHSRYLQSHNQRKVLIQGNTDERGTSEYNLALGQKRAEAVRRALSSMGVPDSQMEAVSLGKEKPQATGHDE
DSWAQNRRADIVY
>Mature_172_residues
SKSQTMIKLAAIAALLALGACSSGVKLDDTAKNGTGGAAGTGADARTVTPVDVGRDELTDPNSPLAKRSIYFDFDSYSVK
SEYQGLLGQHSRYLQSHNQRKVLIQGNTDERGTSEYNLALGQKRAEAVRRALSSMGVPDSQMEAVSLGKEKPQATGHDED
SWAQNRRADIVY

Specific function: Thought to play a role in bacterial envelope integrity. Links the outer membrane to the peptidoglycan layer [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=175, Percent_Identity=36.5714285714286, Blast_Score=115, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 18578; Mature: 18447

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSQTMIKLAAIAALLALGACSSGVKLDDTAKNGTGGAAGTGADARTVTPVDVGRDELT
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DPNSPLAKRSIYFDFDSYSVKSEYQGLLGQHSRYLQSHNQRKVLIQGNTDERGTSEYNLA
CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHH
LGQKRAEAVRRALSSMGVPDSQMEAVSLGKEKPQATGHDEDSWAQNRRADIVY
HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCC
>Mature Secondary Structure 
SKSQTMIKLAAIAALLALGACSSGVKLDDTAKNGTGGAAGTGADARTVTPVDVGRDELT
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DPNSPLAKRSIYFDFDSYSVKSEYQGLLGQHSRYLQSHNQRKVLIQGNTDERGTSEYNLA
CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHH
LGQKRAEAVRRALSSMGVPDSQMEAVSLGKEKPQATGHDEDSWAQNRRADIVY
HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7868272; 11248100 [H]