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The map label for this gene is rfaC [H]

Identifier: 187927738

GI number: 187927738

Start: 682002

End: 683000

Strand: Direct

Name: rfaC [H]

Synonym: Rpic_0642

Alternate gene names: 187927738

Gene position: 682002-683000 (Clockwise)

Preceding gene: 187927737

Following gene: 187927739

Centisome position: 17.3

GC content: 67.17

Gene sequence:

>999_bases
ATGCGCGTGCTGATCGTCAAGGTTTCGTCGCTTGGCGATGTGGTGCATTGCACGCCGGTCGTGGCCGATATCCTGCGTGC
GTATCCGGATGCCGAGATCGACTGGGTGGTCGAGGAGGGTTTCGCCGGCATCGTCCGTATCGTGCGCGGTGTGCAGGGCG
TGATTCCGTTCGCGCTGCGGCGTTGGCGCAAGTCGCTCGGCTCCGGCAGGACTTGGGGCGAGGTGGCGGCGTTCCGTCGC
GCGTTGCGATCCAAGTCGTACGACGCGGTGCTCGACACGCAAGGCCTGATCAAAACGGCGCTCGTTGCGGCGCAGGCCAA
GCTGGTGCCGGGTGGTTTCGTGGCGGGCTTCGGCAATCGGACGGAAGGCGCCGGCTATGAGCCGCTTGCCAAGCTGTTCT
ACCAACGCAAGGTCGAAATGGAACCGCACATCCACGTGGTCGAGCGCTCGCGCCGCATGGTGGCGGAAGCGCTCGGTTAC
GCGCTGCCTGACGCCATCGACTTCGGTTTGCAGCCGCCTGCCGACTTGCCCTTCAATCTGCCACGTCCGTACGTGGCGCT
GGTGCATGCGACTTCGCGCGCCGACAAAGGGTGGCCGCTCGAGGCGTGGGTGGATGTGGCACGCGCGCTGCTTGCCCGCG
ACTACGCCATCGCCCTGCCGTGGGGCAGCGAGACCGAGCGACGCACGAGTGAATCCATCCGCGAGGCTATCGTCGCGGCG
GTGCCGGGTACGGTCGGACGCGTGGTGATTCCGCCGCGCATGTCGCTTCCCGATGTGACGGCATTTCTCGCTCATGCGAC
TGCGGTGGTGGGTGTGGACACCGGCCTCGTGCACATTGCGGCCGCGCTGTGCAAGCCGACCGTGGCGCTCTACAACTTCA
CCACGTCCTGGCGCACGGGGGGGTACTGGACGCCCAACGTGCACGACCTCGGCAGCGCCGAGGCCCATCCCACCAGCGCG
CAGGCGCTCGATGCGCTGCGTGCGCTGGGTGTGCTCTGA

Upstream 100 bases:

>100_bases
GGTGAATTCCGCCGCGTGATCCTGGCCGAAAAGCCGGACGCGCAACTGCCGTTCTGATCGCACGGTTCGCACTCATGAAG
TTGGGGGAAGGGATGACGGC

Downstream 100 bases:

>100_bases
TGCTGCGCGTTCTATATCGCTGGTTGTGGCGCATTGCGCTGCCGTTCGCATTGCTGCGCCTGTGGTGGCGCGGCCGCAAG
GAGCCCGGTTATCGACAGCA

Product: lipopolysaccharide heptosyltransferase I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MRVLIVKVSSLGDVVHCTPVVADILRAYPDAEIDWVVEEGFAGIVRIVRGVQGVIPFALRRWRKSLGSGRTWGEVAAFRR
ALRSKSYDAVLDTQGLIKTALVAAQAKLVPGGFVAGFGNRTEGAGYEPLAKLFYQRKVEMEPHIHVVERSRRMVAEALGY
ALPDAIDFGLQPPADLPFNLPRPYVALVHATSRADKGWPLEAWVDVARALLARDYAIALPWGSETERRTSESIREAIVAA
VPGTVGRVVIPPRMSLPDVTAFLAHATAVVGVDTGLVHIAAALCKPTVALYNFTTSWRTGGYWTPNVHDLGSAEAHPTSA
QALDALRALGVL

Sequences:

>Translated_332_residues
MRVLIVKVSSLGDVVHCTPVVADILRAYPDAEIDWVVEEGFAGIVRIVRGVQGVIPFALRRWRKSLGSGRTWGEVAAFRR
ALRSKSYDAVLDTQGLIKTALVAAQAKLVPGGFVAGFGNRTEGAGYEPLAKLFYQRKVEMEPHIHVVERSRRMVAEALGY
ALPDAIDFGLQPPADLPFNLPRPYVALVHATSRADKGWPLEAWVDVARALLARDYAIALPWGSETERRTSESIREAIVAA
VPGTVGRVVIPPRMSLPDVTAFLAHATAVVGVDTGLVHIAAALCKPTVALYNFTTSWRTGGYWTPNVHDLGSAEAHPTSA
QALDALRALGVL
>Mature_332_residues
MRVLIVKVSSLGDVVHCTPVVADILRAYPDAEIDWVVEEGFAGIVRIVRGVQGVIPFALRRWRKSLGSGRTWGEVAAFRR
ALRSKSYDAVLDTQGLIKTALVAAQAKLVPGGFVAGFGNRTEGAGYEPLAKLFYQRKVEMEPHIHVVERSRRMVAEALGY
ALPDAIDFGLQPPADLPFNLPRPYVALVHATSRADKGWPLEAWVDVARALLARDYAIALPWGSETERRTSESIREAIVAA
VPGTVGRVVIPPRMSLPDVTAFLAHATAVVGVDTGLVHIAAALCKPTVALYNFTTSWRTGGYWTPNVHDLGSAEAHPTSA
QALDALRALGVL

Specific function: Heptose transfer to the lipopolysaccharide core. It transfers the innnermost heptose to [4'-P](3-deoxy-D-manno- octulosonic acid)2-IVA [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790051, Length=306, Percent_Identity=40.8496732026144, Blast_Score=200, Evalue=1e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011908 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.4.1.-

Molecular weight: Translated: 35898; Mature: 35898

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLIVKVSSLGDVVHCTPVVADILRAYPDAEIDWVVEEGFAGIVRIVRGVQGVIPFALR
CEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH
RWRKSLGSGRTWGEVAAFRRALRSKSYDAVLDTQGLIKTALVAAQAKLVPGGFVAGFGNR
HHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCC
TEGAGYEPLAKLFYQRKVEMEPHIHVVERSRRMVAEALGYALPDAIDFGLQPPADLPFNL
CCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCC
PRPYVALVHATSRADKGWPLEAWVDVARALLARDYAIALPWGSETERRTSESIREAIVAA
CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHH
VPGTVGRVVIPPRMSLPDVTAFLAHATAVVGVDTGLVHIAAALCKPTVALYNFTTSWRTG
CCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHEEECCCCCCCC
GYWTPNVHDLGSAEAHPTSAQALDALRALGVL
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MRVLIVKVSSLGDVVHCTPVVADILRAYPDAEIDWVVEEGFAGIVRIVRGVQGVIPFALR
CEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH
RWRKSLGSGRTWGEVAAFRRALRSKSYDAVLDTQGLIKTALVAAQAKLVPGGFVAGFGNR
HHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCC
TEGAGYEPLAKLFYQRKVEMEPHIHVVERSRRMVAEALGYALPDAIDFGLQPPADLPFNL
CCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCC
PRPYVALVHATSRADKGWPLEAWVDVARALLARDYAIALPWGSETERRTSESIREAIVAA
CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHH
VPGTVGRVVIPPRMSLPDVTAFLAHATAVVGVDTGLVHIAAALCKPTVALYNFTTSWRTG
CCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHEEECCCCCCCC
GYWTPNVHDLGSAEAHPTSAQALDALRALGVL
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8478319; 8041620; 9278503; 1624462 [H]