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The map label for this gene is yjiR [H]

Identifier: 187927628

GI number: 187927628

Start: 563794

End: 565257

Strand: Direct

Name: yjiR [H]

Synonym: Rpic_0528

Alternate gene names: 187927628

Gene position: 563794-565257 (Clockwise)

Preceding gene: 187927626

Following gene: 187927633

Centisome position: 14.3

GC content: 67.14

Gene sequence:

>1464_bases
ATGTCCGTCACCGAGTTGACTCCCCCGCCCGCGCAGCCGCTGTATCGGACGCTTGCCGATCATTACCTCGGCGCGATCCG
CAGTGGGGTGTTGGCGCCGGGGGAGCGCATGCCGTCGGTACGCATGCTGATGCGCACGCACGCCGTCAGTCTGTCGACTG
CGCTGCAGGTATGCCGGCATCTGGAGGCGGAAGGCTGGCTCGAAGCGCGTGAACGCTCGGGTTACTTTGTGCGCCAGCCG
CGCCGGGCGCTGCTCGCGCCGGTGAAGGAACCCGAGGTGTCGACGCCGGATCCGGCGGCCTACGTGGGCGTGCATGCGCG
CGTGTCGGCCATCGTGGCGCGCGGGCAGCAAGCCACAGTGCATGTCGATCTATCCGGCGCGAGCGGGGCGGCCGCGTTGT
ATCCGGCAGCGGCGCTCAACCGGATTGCGTCGCAGGTGCTGCGGCGGTATCCGCTGCTGCTGACACAGGCCGTCATCCCG
AACGGCCATCCTGAATTGCAGACTGCCGTGGCGCGCCGCGCGCTCGACATGGGCGTGCAGGTCGCGCCGGACGACGTCAT
CGTCACCCACGGCTGTATCGAGGCGGTCAACCTGGCATTGCGCGCGGTGGCCCAGCCGGGCGATACGGTGGCGGTGGAGT
CGCCGACCTACTACGGGCTGCTGCAGGTGCTGGAAAGCCTCGGCATGCGCGCGGTGGAAATTCCTACCAGCCCGCGCACC
GGCATGTCGCTGGAAGCGCTGGAGATGGCGGTGCAGGCCTACGGCAACATTCGCGCCGTGGTGGTGGTGCCCAATCTGCA
GAATCCGCTCGGCAGCATCATGCCCGACGCCGCCAAGCGCCGGATGGCGGCCTTTTGCGATGCCAACCGCATCGCGCTTA
TTGAAGACGATACCTACAGCGCGCTCGGCGACAGCCCCACGCCGCTCAGGGCACTCAAGGCATGGGACCGCACAGGCAGC
GTCATTTATTGCGCGTCGTTGAGCAAGGTGTTGGCACCCGGCCTGCGCCTGGGCTGGATGGCGGCCGGCCGCTGGCAGGG
GCGTGTGCAGATGCTGAAGTTTGCGCAATCGCGGCCGAACGATTCTTGGTCGCAGGTGCTGGCGGGGCGCTTTATCGCCT
CTGGCGCGTACGACCGTCACCTGCGCACGCTGCGCCAGACGTTGCGCGAACAGCGCGAGCGGATGGCTGAATCGATTGCC
GGATGTTTTCCCGCCGGCACGCGGTTATCCGTGCCGTCAGGCGGGTTGGCGATGTGGGTGGAGCTGCCAGCCAACGTGTC
GTCGATGGAACTGTTCGATGCGGCGCTGGCACAGGGCATCCGGATTGCGCCGGGCACGATGTTCTCGAACCTGAACCGCT
TCGATCATTTCTTCCGCATCTGCTTCGGGCTGGCACCTTCGGCCAACCTGGAAGCTGCGCTTGCCACGCTCGGCCAGATC
ACGCAGGAACTGGCCGAGCGCTGA

Upstream 100 bases:

>100_bases
GTTTGACGTCGTCTGTATCTGTTGCGGTCACGGTCTTGCCGGCATGATGTGCTGGACACCTCTCCTTGCCGCTTGCTGCC
GCCCGACGCTCCTTGCCGCC

Downstream 100 bases:

>100_bases
CCGATCGACCTACCGGCACCACGCCGGCACAGCGGAAGGCGCTTCCAGACCCTGCACACTCTGCGCAATCTGTTGCGACC
ATTGCTGGACGAGGCGTTGC

Product: GntR family transcriptional regulator with aminotransferase domain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 487; Mature: 486

Protein sequence:

>487_residues
MSVTELTPPPAQPLYRTLADHYLGAIRSGVLAPGERMPSVRMLMRTHAVSLSTALQVCRHLEAEGWLEARERSGYFVRQP
RRALLAPVKEPEVSTPDPAAYVGVHARVSAIVARGQQATVHVDLSGASGAAALYPAAALNRIASQVLRRYPLLLTQAVIP
NGHPELQTAVARRALDMGVQVAPDDVIVTHGCIEAVNLALRAVAQPGDTVAVESPTYYGLLQVLESLGMRAVEIPTSPRT
GMSLEALEMAVQAYGNIRAVVVVPNLQNPLGSIMPDAAKRRMAAFCDANRIALIEDDTYSALGDSPTPLRALKAWDRTGS
VIYCASLSKVLAPGLRLGWMAAGRWQGRVQMLKFAQSRPNDSWSQVLAGRFIASGAYDRHLRTLRQTLREQRERMAESIA
GCFPAGTRLSVPSGGLAMWVELPANVSSMELFDAALAQGIRIAPGTMFSNLNRFDHFFRICFGLAPSANLEAALATLGQI
TQELAER

Sequences:

>Translated_487_residues
MSVTELTPPPAQPLYRTLADHYLGAIRSGVLAPGERMPSVRMLMRTHAVSLSTALQVCRHLEAEGWLEARERSGYFVRQP
RRALLAPVKEPEVSTPDPAAYVGVHARVSAIVARGQQATVHVDLSGASGAAALYPAAALNRIASQVLRRYPLLLTQAVIP
NGHPELQTAVARRALDMGVQVAPDDVIVTHGCIEAVNLALRAVAQPGDTVAVESPTYYGLLQVLESLGMRAVEIPTSPRT
GMSLEALEMAVQAYGNIRAVVVVPNLQNPLGSIMPDAAKRRMAAFCDANRIALIEDDTYSALGDSPTPLRALKAWDRTGS
VIYCASLSKVLAPGLRLGWMAAGRWQGRVQMLKFAQSRPNDSWSQVLAGRFIASGAYDRHLRTLRQTLREQRERMAESIA
GCFPAGTRLSVPSGGLAMWVELPANVSSMELFDAALAQGIRIAPGTMFSNLNRFDHFFRICFGLAPSANLEAALATLGQI
TQELAER
>Mature_486_residues
SVTELTPPPAQPLYRTLADHYLGAIRSGVLAPGERMPSVRMLMRTHAVSLSTALQVCRHLEAEGWLEARERSGYFVRQPR
RALLAPVKEPEVSTPDPAAYVGVHARVSAIVARGQQATVHVDLSGASGAAALYPAAALNRIASQVLRRYPLLLTQAVIPN
GHPELQTAVARRALDMGVQVAPDDVIVTHGCIEAVNLALRAVAQPGDTVAVESPTYYGLLQVLESLGMRAVEIPTSPRTG
MSLEALEMAVQAYGNIRAVVVVPNLQNPLGSIMPDAAKRRMAAFCDANRIALIEDDTYSALGDSPTPLRALKAWDRTGSV
IYCASLSKVLAPGLRLGWMAAGRWQGRVQMLKFAQSRPNDSWSQVLAGRFIASGAYDRHLRTLRQTLREQRERMAESIAG
CFPAGTRLSVPSGGLAMWVELPANVSSMELFDAALAQGIRIAPGTMFSNLNRFDHFFRICFGLAPSANLEAALATLGQIT
QELAER

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=315, Percent_Identity=21.9047619047619, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI33469970, Length=315, Percent_Identity=21.9047619047619, Blast_Score=82, Evalue=1e-15,
Organism=Escherichia coli, GI1790797, Length=475, Percent_Identity=36, Blast_Score=276, Evalue=2e-75,
Organism=Escherichia coli, GI1787710, Length=477, Percent_Identity=34.3815513626834, Blast_Score=275, Evalue=5e-75,
Organism=Saccharomyces cerevisiae, GI6321000, Length=229, Percent_Identity=24.8908296943231, Blast_Score=66, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52598; Mature: 52467

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVTELTPPPAQPLYRTLADHYLGAIRSGVLAPGERMPSVRMLMRTHAVSLSTALQVCRH
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LEAEGWLEARERSGYFVRQPRRALLAPVKEPEVSTPDPAAYVGVHARVSAIVARGQQATV
CCHHHHHHHHHCCCCEEECCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
HVDLSGASGAAALYPAAALNRIASQVLRRYPLLLTQAVIPNGHPELQTAVARRALDMGVQ
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCE
VAPDDVIVTHGCIEAVNLALRAVAQPGDTVAVESPTYYGLLQVLESLGMRAVEIPTSPRT
ECCCCEEEEHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCEEEECCCCCCC
GMSLEALEMAVQAYGNIRAVVVVPNLQNPLGSIMPDAAKRRMAAFCDANRIALIEDDTYS
CCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHCCCHHHHHHHHHHCCCCCEEEEECCCHH
ALGDSPTPLRALKAWDRTGSVIYCASLSKVLAPGLRLGWMAAGRWQGRVQMLKFAQSRPN
HCCCCCCHHHHHHHHCCCCCEEEEEHHHHHHCCCCHHHHEECCCHHHHHHHHHHHHCCCC
DSWSQVLAGRFIASGAYDRHLRTLRQTLREQRERMAESIAGCFPAGTRLSVPSGGLAMWV
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEE
ELPANVSSMELFDAALAQGIRIAPGTMFSNLNRFDHFFRICFGLAPSANLEAALATLGQI
ECCCCCHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
TQELAER
HHHHHCC
>Mature Secondary Structure 
SVTELTPPPAQPLYRTLADHYLGAIRSGVLAPGERMPSVRMLMRTHAVSLSTALQVCRH
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LEAEGWLEARERSGYFVRQPRRALLAPVKEPEVSTPDPAAYVGVHARVSAIVARGQQATV
CCHHHHHHHHHCCCCEEECCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
HVDLSGASGAAALYPAAALNRIASQVLRRYPLLLTQAVIPNGHPELQTAVARRALDMGVQ
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCE
VAPDDVIVTHGCIEAVNLALRAVAQPGDTVAVESPTYYGLLQVLESLGMRAVEIPTSPRT
ECCCCEEEEHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCEEEECCCCCCC
GMSLEALEMAVQAYGNIRAVVVVPNLQNPLGSIMPDAAKRRMAAFCDANRIALIEDDTYS
CCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHCCCHHHHHHHHHHCCCCCEEEEECCCHH
ALGDSPTPLRALKAWDRTGSVIYCASLSKVLAPGLRLGWMAAGRWQGRVQMLKFAQSRPN
HCCCCCCHHHHHHHHCCCCCEEEEEHHHHHHCCCCHHHHEECCCHHHHHHHHHHHHCCCC
DSWSQVLAGRFIASGAYDRHLRTLRQTLREQRERMAESIAGCFPAGTRLSVPSGGLAMWV
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEE
ELPANVSSMELFDAALAQGIRIAPGTMFSNLNRFDHFFRICFGLAPSANLEAALATLGQI
ECCCCCHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
TQELAER
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]