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The map label for this gene is rbfA

Identifier: 187918656

GI number: 187918656

Start: 860681

End: 861040

Strand: Direct

Name: rbfA

Synonym: BH0802

Alternate gene names: 187918656

Gene position: 860681-861040 (Clockwise)

Preceding gene: 187918655

Following gene: 187918657

Centisome position: 93.32

GC content: 29.44

Gene sequence:

>360_bases
ATGGAAAAAGAGATAAGAAAATCGAAACTTGAGAGTTTGTTAGTTCAAGAGATTGGTAATTTAATATTGACGAAAGGCAT
TAAAGATCCTAGAGTTCATGAGTTCTTAACTGTTGTGAGAGTTGAGATTTCAAACGATTTAATAAATGCCAAAGTATTTA
TTGGCTCTATTAAAGAGGGCGCATCTCTTGATAATGCTGTTAAGGCATTAAATAATGCTAAGGGATTCATTCAAGGAGAG
ATTGTTAAACGTATTAGAGTTAGAAATACTCCAAAATTAAGTTTTTTAAGAGATGATACTATTTCTAAGGCTTTTTATGT
TAATAAGATAATTGAAAATTTAAGTTTTAGTGACGAATAG

Upstream 100 bases:

>100_bases
ATTATTTTAATATTAAGGAAGGAGATATCATTGAGGCCTTTGAGATTAAGAAAGTAAAGAGACGTTTTGGATCTTAAAGA
TTTGCTTTATTATTTTATGT

Downstream 100 bases:

>100_bases
TAAAATTTAGTGAATGGGATTATTTTATTAAATAAGAGAATTGGAATAACTTCTTGTGATACCCTTTTTCCTTTAAAGAG
GTATTTTTCTACAAGTCGAG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 119; Mature: 119

Protein sequence:

>119_residues
MEKEIRKSKLESLLVQEIGNLILTKGIKDPRVHEFLTVVRVEISNDLINAKVFIGSIKEGASLDNAVKALNNAKGFIQGE
IVKRIRVRNTPKLSFLRDDTISKAFYVNKIIENLSFSDE

Sequences:

>Translated_119_residues
MEKEIRKSKLESLLVQEIGNLILTKGIKDPRVHEFLTVVRVEISNDLINAKVFIGSIKEGASLDNAVKALNNAKGFIQGE
IVKRIRVRNTPKLSFLRDDTISKAFYVNKIIENLSFSDE
>Mature_119_residues
MEKEIRKSKLESLLVQEIGNLILTKGIKDPRVHEFLTVVRVEISNDLINAKVFIGSIKEGASLDNAVKALNNAKGFIQGE
IVKRIRVRNTPKLSFLRDDTISKAFYVNKIIENLSFSDE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=122, Percent_Identity=33.6065573770492, Blast_Score=64, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_BORHD (B2S1E6)

Other databases:

- EMBL:   CP000048
- RefSeq:   YP_001884222.1
- ProteinModelPortal:   B2S1E6
- EnsemblBacteria:   EBBORT00000006976
- GeneID:   6276563
- GenomeReviews:   CP000048_GR
- KEGG:   bhr:BH0802
- GeneTree:   EBGT00050000007484
- HOGENOM:   HBG751055
- OMA:   INAKVFI
- ProtClustDB:   CLSK507848
- BioCyc:   BHER314723:BH0802-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13442; Mature: 13442

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKEIRKSKLESLLVQEIGNLILTKGIKDPRVHEFLTVVRVEISNDLINAKVFIGSIKEG
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHEEECCCCC
ASLDNAVKALNNAKGFIQGEIVKRIRVRNTPKLSFLRDDTISKAFYVNKIIENLSFSDE
CCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MEKEIRKSKLESLLVQEIGNLILTKGIKDPRVHEFLTVVRVEISNDLINAKVFIGSIKEG
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHEEECCCCC
ASLDNAVKALNNAKGFIQGEIVKRIRVRNTPKLSFLRDDTISKAFYVNKIIENLSFSDE
CCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA