| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is hflX [H]
Identifier: 187735093
GI number: 187735093
Start: 694693
End: 696006
Strand: Reverse
Name: hflX [H]
Synonym: Amuc_0587
Alternate gene names: 187735093
Gene position: 696006-694693 (Counterclockwise)
Preceding gene: 187735094
Following gene: 187735090
Centisome position: 26.13
GC content: 59.06
Gene sequence:
>1314_bases ATGTTTGAAATCCGCGAAAAACCGGAAATGGTGGAACGGGCCATGCTCGTTTCCGTTTACTTCGATCCCTCCGAGGCTGG GGAAAAACAGGCCATGCTGGATGAGCTGGAAGACCTTGTCTCCAATCTCGGCATCGGCATCGCAGGGAAGCACCTTATCA AGTCCAGGGACATGCACGCCAAATTCCTGTGCGGCACCGGAAAGGCGCAGGAAGTGAAACAGCTGGCGCTGGATTGCCGG GCGGATTGCGTTGTTTTTGACAATATGCTCTCCCCTTCCCAGCAGAGGGAATGGGAACGGCTTGTTGACGAATGCGTCAT TGACCGTGAAGAGGTCATTCTGGACATCTTTGCCAGGCGCGCCCGGACACGGGAAGCCACCCTGCAGGTGGAACTGGCCC GCATGCAGTATTCCCTGCCGCGCATGGCCCGCATGTGGAACCACCTGGACCGCCAGGGCGGGGGCTCCGGCGGCGGCAAG GGAGGCGGCGGAGCCGCCAGGGGGGAAGGGGAAAAGCAGATTGAAGTGGACCGTCGTCTGGCGCGCGCCAGAATTGAGGC TATTCAAAGGGAACTGGTCCTGGTGACCCGTCAGCGTGCCACGCAGCGCAAGGAACGGGAGCGCCAGGCTGTCGCCACGG CCGCCATTGTAGGTTATACCAATGCCGGAAAATCCTCCCTCCTGTCCCTGGTGTCCGGGTCTGAAGTCATGGCCAGGGAT ATGCTTTTTGCCACGCTGGACACCACAACGCGGAAGATAGAGCTTCCCCATGGGCAGCCGCTGCTGCTGACGGATACCGT GGGCTTCATCCGCAACCTTCCGCACCGTCTGGTGGAAGCGTTCAAGTCCACGCTGGAGGAAGCCGTTCTGGCGGATTTCC TGATTCAGGTGGTGGACGCTTCCGATCCGGAAGCCGTGCGCCATTATGAAACGACTCTGGAGGTTCTCAATGAACTGGGT GCGGGTGACAAGCCCATGATCGTAGTTTTAAACAAGGTGGACCTGGTGCCGGAAGAACGGCGCGGGGCCCTGGAAACGCT GCTGGCGCCTCATTTCAGCGGCAGGGTGGTTCCCATGTCCGTGAAAGAAGGGAATGGTGAGGGAGACCTGCTGAATGCCT GCGTGGAAATGCTGGAAAGCCGTGTCCGGCGCGCCCGGTTCCTGATTCCCTATACCCGCAGCGACCTGGTGGCCGCCATG CATAGTGAAGGCAAGGTTTTCTCTACGGAATATGTAGAGGAAGGGACCTTGCTGGAAGCCGTGCTTCCTGTGGCCTTTTA CAATAAACTGGAGTCATTCCTGGCAGACAGGTAA
Upstream 100 bases:
>100_bases CTTCCTCTCTTCATGCAGTTGTGATTGTCATAAGCCCGCGGACTTCGCTCTGAAGGATTACCAGCCTACCTCCAGCAAGC AATTCCGTTAAATTTCCTAT
Downstream 100 bases:
>100_bases TACCCTGTTCCTGAAGCCTGGGGCTTTGCCTTGCGTTCCGAAGGCCGTTCCGGGGCGGGAAGCGTTTTTTCTTCCGGAGA CAGTATCCGGATTCCTGGAC
Product: GTP-binding proten HflX
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 437; Mature: 437
Protein sequence:
>437_residues MFEIREKPEMVERAMLVSVYFDPSEAGEKQAMLDELEDLVSNLGIGIAGKHLIKSRDMHAKFLCGTGKAQEVKQLALDCR ADCVVFDNMLSPSQQREWERLVDECVIDREEVILDIFARRARTREATLQVELARMQYSLPRMARMWNHLDRQGGGSGGGK GGGGAARGEGEKQIEVDRRLARARIEAIQRELVLVTRQRATQRKERERQAVATAAIVGYTNAGKSSLLSLVSGSEVMARD MLFATLDTTTRKIELPHGQPLLLTDTVGFIRNLPHRLVEAFKSTLEEAVLADFLIQVVDASDPEAVRHYETTLEVLNELG AGDKPMIVVLNKVDLVPEERRGALETLLAPHFSGRVVPMSVKEGNGEGDLLNACVEMLESRVRRARFLIPYTRSDLVAAM HSEGKVFSTEYVEEGTLLEAVLPVAFYNKLESFLADR
Sequences:
>Translated_437_residues MFEIREKPEMVERAMLVSVYFDPSEAGEKQAMLDELEDLVSNLGIGIAGKHLIKSRDMHAKFLCGTGKAQEVKQLALDCR ADCVVFDNMLSPSQQREWERLVDECVIDREEVILDIFARRARTREATLQVELARMQYSLPRMARMWNHLDRQGGGSGGGK GGGGAARGEGEKQIEVDRRLARARIEAIQRELVLVTRQRATQRKERERQAVATAAIVGYTNAGKSSLLSLVSGSEVMARD MLFATLDTTTRKIELPHGQPLLLTDTVGFIRNLPHRLVEAFKSTLEEAVLADFLIQVVDASDPEAVRHYETTLEVLNELG AGDKPMIVVLNKVDLVPEERRGALETLLAPHFSGRVVPMSVKEGNGEGDLLNACVEMLESRVRRARFLIPYTRSDLVAAM HSEGKVFSTEYVEEGTLLEAVLPVAFYNKLESFLADR >Mature_437_residues MFEIREKPEMVERAMLVSVYFDPSEAGEKQAMLDELEDLVSNLGIGIAGKHLIKSRDMHAKFLCGTGKAQEVKQLALDCR ADCVVFDNMLSPSQQREWERLVDECVIDREEVILDIFARRARTREATLQVELARMQYSLPRMARMWNHLDRQGGGSGGGK GGGGAARGEGEKQIEVDRRLARARIEAIQRELVLVTRQRATQRKERERQAVATAAIVGYTNAGKSSLLSLVSGSEVMARD MLFATLDTTTRKIELPHGQPLLLTDTVGFIRNLPHRLVEAFKSTLEEAVLADFLIQVVDASDPEAVRHYETTLEVLNELG AGDKPMIVVLNKVDLVPEERRGALETLLAPHFSGRVVPMSVKEGNGEGDLLNACVEMLESRVRRARFLIPYTRSDLVAAM HSEGKVFSTEYVEEGTLLEAVLPVAFYNKLESFLADR
Specific function: Unknown
COG id: COG2262
COG function: function code R; GTPases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI310124269, Length=231, Percent_Identity=35.4978354978355, Blast_Score=115, Evalue=9e-26, Organism=Homo sapiens, GI310124267, Length=231, Percent_Identity=35.4978354978355, Blast_Score=115, Evalue=9e-26, Organism=Homo sapiens, GI310124171, Length=231, Percent_Identity=35.4978354978355, Blast_Score=115, Evalue=9e-26, Organism=Homo sapiens, GI310124169, Length=231, Percent_Identity=35.4978354978355, Blast_Score=115, Evalue=9e-26, Organism=Homo sapiens, GI310133116, Length=231, Percent_Identity=35.0649350649351, Blast_Score=112, Evalue=8e-25, Organism=Homo sapiens, GI310133118, Length=231, Percent_Identity=35.0649350649351, Blast_Score=111, Evalue=1e-24, Organism=Escherichia coli, GI1790615, Length=423, Percent_Identity=39.7163120567376, Blast_Score=251, Evalue=4e-68, Organism=Caenorhabditis elegans, GI17561038, Length=300, Percent_Identity=30.6666666666667, Blast_Score=127, Evalue=1e-29, Organism=Drosophila melanogaster, GI24650079, Length=314, Percent_Identity=33.7579617834395, Blast_Score=116, Evalue=4e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR016496 - InterPro: IPR006073 - InterPro: IPR002917 [H]
Pfam domain/function: PF01926 MMR_HSR1 [H]
EC number: NA
Molecular weight: Translated: 48735; Mature: 48735
Theoretical pI: Translated: 5.44; Mature: 5.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFEIREKPEMVERAMLVSVYFDPSEAGEKQAMLDELEDLVSNLGIGIAGKHLIKSRDMHA CCCCCCCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCE KFLCGTGKAQEVKQLALDCRADCVVFDNMLSPSQQREWERLVDECVIDREEVILDIFARR EEEECCCCHHHHHHHHHHCCCCCEEEHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH ARTREATLQVELARMQYSLPRMARMWNHLDRQGGGSGGGKGGGGAARGEGEKQIEVDRRL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH ARARIEAIQRELVLVTRQRATQRKERERQAVATAAIVGYTNAGKSSLLSLVSGSEVMARD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHH MLFATLDTTTRKIELPHGQPLLLTDTVGFIRNLPHRLVEAFKSTLEEAVLADFLIQVVDA HHHHHHCCCCEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SDPEAVRHYETTLEVLNELGAGDKPMIVVLNKVDLVPEERRGALETLLAPHFSGRVVPMS CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEE VKEGNGEGDLLNACVEMLESRVRRARFLIPYTRSDLVAAMHSEGKVFSTEYVEEGTLLEA ECCCCCCHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHCCCCEEEHHHHCCCHHHHH VLPVAFYNKLESFLADR HHHHHHHHHHHHHHCCC >Mature Secondary Structure MFEIREKPEMVERAMLVSVYFDPSEAGEKQAMLDELEDLVSNLGIGIAGKHLIKSRDMHA CCCCCCCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCE KFLCGTGKAQEVKQLALDCRADCVVFDNMLSPSQQREWERLVDECVIDREEVILDIFARR EEEECCCCHHHHHHHHHHCCCCCEEEHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH ARTREATLQVELARMQYSLPRMARMWNHLDRQGGGSGGGKGGGGAARGEGEKQIEVDRRL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH ARARIEAIQRELVLVTRQRATQRKERERQAVATAAIVGYTNAGKSSLLSLVSGSEVMARD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHH MLFATLDTTTRKIELPHGQPLLLTDTVGFIRNLPHRLVEAFKSTLEEAVLADFLIQVVDA HHHHHHCCCCEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SDPEAVRHYETTLEVLNELGAGDKPMIVVLNKVDLVPEERRGALETLLAPHFSGRVVPMS CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEE VKEGNGEGDLLNACVEMLESRVRRARFLIPYTRSDLVAAMHSEGKVFSTEYVEEGTLLEA ECCCCCCHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHCCCCEEEHHHHCCCHHHHH VLPVAFYNKLESFLADR HHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8248183; 7610040; 9278503; 2020545; 3040675 [H]