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The map label for this gene is yafK [H]

Identifier: 187735088

GI number: 187735088

Start: 683210

End: 683944

Strand: Reverse

Name: yafK [H]

Synonym: Amuc_0582

Alternate gene names: 187735088

Gene position: 683944-683210 (Counterclockwise)

Preceding gene: 187735090

Following gene: 187735086

Centisome position: 25.67

GC content: 55.24

Gene sequence:

>735_bases
ATGAAGAAGAATGTAGTCTTGTCCTTGCTGGGGCTGGTTCTGCTGGTTTCCGCCGTAGCGGTTTTCAATATGGCATGTGC
AGAAAAATCCTCCAACCGTGCGGATATCGCGCGGAAACGGGTAACGCCCGTGCTGAATTCCTTTCTGGAGCCGTGCGGCG
CCAGGGTGGGAAGTCCTGTGTTTTTACGGGCCGTAAAGGAAGACTCCGTCCTGGAACTGTGGGTGAAACCGGACAAATCG
GAATGCTACATGCTTGCCAAGCGCTATCCGATTGCCGCATGGTCCGGAAAACTGGGCCCCAAGGAGAAGGAAGGGGACAG
GCAAACACCGGAAGGTTTTTATGAAGTGGAACCGTCCGGGCTTAATCCCCGGAGCAATTACCATTTGTCTTTCAACATCG
GGTATCCGAATGCCTATGACCGTTCCCTGAACCGGACGGGAAGCTTCATCATGGTGCATGGACGGGATGTTTCCATCGGC
TGTCTGGCGATGACCGATTCCGGAATTGAGGAGATTTATACCATGGTGGAACAAGCTCTGGTTCATGGGCAAAAAAACGT
TCCCGTGCAGATTTATCCCTTCGTGCCCACTCCGGCGCGTTTGTCAGAGGAAAAGGATTCTCCCCACGCCGCCTTTTGGG
CGGACATGGCCCGAGCGTGGGACTGGACGGAACGGACCCGTACTCCGGCCCGGGTGAAGGCCGTCAATGGCAGGCTGGTC
GTTGTGGAGCAATAA

Upstream 100 bases:

>100_bases
TTTCCGTCTTCTTTTTCCGCCGTTTTTTCCTTTTCCTTCTTCGGAGAGAAACGGCCGGTTTTCTGCTTGTCAAAACAAAA
GCCGCCATTATAGATGATTT

Downstream 100 bases:

>100_bases
AAATCCTCCGGTCCTCAACCGGAGGATAAAGGAAGGCCCGCGGAACAGGGGCGGCAGGAGCGCCCCTGGTACCGTGTGTC
CGGAATGCTCCGGGTTAGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MKKNVVLSLLGLVLLVSAVAVFNMACAEKSSNRADIARKRVTPVLNSFLEPCGARVGSPVFLRAVKEDSVLELWVKPDKS
ECYMLAKRYPIAAWSGKLGPKEKEGDRQTPEGFYEVEPSGLNPRSNYHLSFNIGYPNAYDRSLNRTGSFIMVHGRDVSIG
CLAMTDSGIEEIYTMVEQALVHGQKNVPVQIYPFVPTPARLSEEKDSPHAAFWADMARAWDWTERTRTPARVKAVNGRLV
VVEQ

Sequences:

>Translated_244_residues
MKKNVVLSLLGLVLLVSAVAVFNMACAEKSSNRADIARKRVTPVLNSFLEPCGARVGSPVFLRAVKEDSVLELWVKPDKS
ECYMLAKRYPIAAWSGKLGPKEKEGDRQTPEGFYEVEPSGLNPRSNYHLSFNIGYPNAYDRSLNRTGSFIMVHGRDVSIG
CLAMTDSGIEEIYTMVEQALVHGQKNVPVQIYPFVPTPARLSEEKDSPHAAFWADMARAWDWTERTRTPARVKAVNGRLV
VVEQ
>Mature_244_residues
MKKNVVLSLLGLVLLVSAVAVFNMACAEKSSNRADIARKRVTPVLNSFLEPCGARVGSPVFLRAVKEDSVLELWVKPDKS
ECYMLAKRYPIAAWSGKLGPKEKEGDRQTPEGFYEVEPSGLNPRSNYHLSFNIGYPNAYDRSLNRTGSFIMVHGRDVSIG
CLAMTDSGIEEIYTMVEQALVHGQKNVPVQIYPFVPTPARLSEEKDSPHAAFWADMARAWDWTERTRTPARVKAVNGRLV
VVEQ

Specific function: Unknown

COG id: COG3034

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1786418, Length=235, Percent_Identity=40.8510638297872, Blast_Score=182, Evalue=2e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 27200; Mature: 27200

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNVVLSLLGLVLLVSAVAVFNMACAEKSSNRADIARKRVTPVLNSFLEPCGARVGSPV
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCE
FLRAVKEDSVLELWVKPDKSECYMLAKRYPIAAWSGKLGPKEKEGDRQTPEGFYEVEPSG
EEEEECCCCEEEEEECCCCHHEEEHHHCCCCEECCCCCCCCCCCCCCCCCCCEEEECCCC
LNPRSNYHLSFNIGYPNAYDRSLNRTGSFIMVHGRDVSIGCLAMTDSGIEEIYTMVEQAL
CCCCCCEEEEEEECCCCHHHHCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHH
VHGQKNVPVQIYPFVPTPARLSEEKDSPHAAFWADMARAWDWTERTRTPARVKAVNGRLV
HCCCCCCCEEEEECCCCCHHHCCCCCCCHHHHHHHHHHHCCCHHHCCCCCEEEEECCEEE
VVEQ
EEEC
>Mature Secondary Structure
MKKNVVLSLLGLVLLVSAVAVFNMACAEKSSNRADIARKRVTPVLNSFLEPCGARVGSPV
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCE
FLRAVKEDSVLELWVKPDKSECYMLAKRYPIAAWSGKLGPKEKEGDRQTPEGFYEVEPSG
EEEEECCCCEEEEEECCCCHHEEEHHHCCCCEECCCCCCCCCCCCCCCCCCCEEEECCCC
LNPRSNYHLSFNIGYPNAYDRSLNRTGSFIMVHGRDVSIGCLAMTDSGIEEIYTMVEQAL
CCCCCCEEEEEEECCCCHHHHCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHH
VHGQKNVPVQIYPFVPTPARLSEEKDSPHAAFWADMARAWDWTERTRTPARVKAVNGRLV
HCCCCCCCEEEEECCCCCHHHCCCCCCCHHHHHHHHHHHCCCHHHCCCCCEEEEECCEEE
VVEQ
EEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]