| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is 187735050
Identifier: 187735050
GI number: 187735050
Start: 641820
End: 642842
Strand: Reverse
Name: 187735050
Synonym: Amuc_0543
Alternate gene names: NA
Gene position: 642842-641820 (Counterclockwise)
Preceding gene: 187735051
Following gene: 187735046
Centisome position: 24.13
GC content: 56.79
Gene sequence:
>1023_bases ATGGTATTGGCCGGACTGTCCTCCCTGGTTCCGTCCATGGCCCAGAATGCCCAGAATCCCCAGCGCCTGCGCGCCAGAGT TGCCGCACCGACCATCAAGAATGGCCGTCCGACGGATATCTACATTCTTTCCTCCAATGGACCCACGGTCCAGTTTGTGG AGAGCAGGGAATCCCAGGAAGTCCTTCAGCAGATGGCCAGCGCCTTCAAGACGCTGTATATTTTTGAAACGGACGACTTT GTGGATGCCAAGGTGGCTATGGAAAACCGGAAGTACCAGGAAGCCCGCAACAAATTCCACGCTCTGGTGAATAAGTATGC CTCAACGCTTTCCATCAAGGACAGCCTGTCCGCCCGGGCGGCCGTCTATGAACTGGAGTGCGCCATGCGCATGATGGATT GGGCTGGAGTCAAAGGGTTGGCGGCCAAGTTTCCCGTCAGAGGGGCCAATTTGTCCCCTTCCGCCCAGAATGACCTGGAG GTGGCAAAAATCATGGCCTTGATTCCAGATAAGGACTGGAACGGCGTGAAAAGCCGTGCCGGTTCTTTCCTGGCAACCAA AAAGAATGCCACCCGCCTCCAGCAGGCGCGGATGAAATATGCCCTGGGTGCGGCCGCCATGGTGGCCCAGGATTGGAACA AGGCGCTGGATTATTTTGCGGAAGCCCTGGTTTTGTTGCATGGTTCCGATGAAGAACTGGCGTCTGCCTGCGTGGCCCGC TCCCTGGATGCCTACCTGCGCATGCCGGATGTTGTCAAATTCTTTGAGAATCCCGTCGTCTCATCTGCCGTGGAATCCAG GAAGAATAATCCCGAAGCTGTGATTCCGGATTCACGGCTGAAGTCCCGTCCCGTTCCTGTCAAGGAAGCGGCTGCCCTGT ACCGTTTGCATGAACTGATGTTCCCGGACAGGAAGCTGCCGGCCAAGTATGACGGTTTTGCGGTTTCCTACAAGCATCCG GCCGCTGTTGCTCCCGCCAAGGCTCCTGACCAGGCTCCCGCACAGCCGCAGAATAAGCAGTAA
Upstream 100 bases:
>100_bases CGGACATTGCCGCCTATGAAGCAGCCGTACGCGCCGCCAAGGGCCAGAAATAATAACAAGAGGTTTAGTAATCAATCATA TGAAAGCACTTTCAGTAATA
Downstream 100 bases:
>100_bases TAAAGCTTCGCGGCAGGTTGTTCGCCGGCCGATATTTCTTTAATAAGGGCCGTCTCCCCATAAGGGGGGAGACGGCCCTT GTGTTGAGTTTTTCTTGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 340; Mature: 340
Protein sequence:
>340_residues MVLAGLSSLVPSMAQNAQNPQRLRARVAAPTIKNGRPTDIYILSSNGPTVQFVESRESQEVLQQMASAFKTLYIFETDDF VDAKVAMENRKYQEARNKFHALVNKYASTLSIKDSLSARAAVYELECAMRMMDWAGVKGLAAKFPVRGANLSPSAQNDLE VAKIMALIPDKDWNGVKSRAGSFLATKKNATRLQQARMKYALGAAAMVAQDWNKALDYFAEALVLLHGSDEELASACVAR SLDAYLRMPDVVKFFENPVVSSAVESRKNNPEAVIPDSRLKSRPVPVKEAAALYRLHELMFPDRKLPAKYDGFAVSYKHP AAVAPAKAPDQAPAQPQNKQ
Sequences:
>Translated_340_residues MVLAGLSSLVPSMAQNAQNPQRLRARVAAPTIKNGRPTDIYILSSNGPTVQFVESRESQEVLQQMASAFKTLYIFETDDF VDAKVAMENRKYQEARNKFHALVNKYASTLSIKDSLSARAAVYELECAMRMMDWAGVKGLAAKFPVRGANLSPSAQNDLE VAKIMALIPDKDWNGVKSRAGSFLATKKNATRLQQARMKYALGAAAMVAQDWNKALDYFAEALVLLHGSDEELASACVAR SLDAYLRMPDVVKFFENPVVSSAVESRKNNPEAVIPDSRLKSRPVPVKEAAALYRLHELMFPDRKLPAKYDGFAVSYKHP AAVAPAKAPDQAPAQPQNKQ >Mature_340_residues MVLAGLSSLVPSMAQNAQNPQRLRARVAAPTIKNGRPTDIYILSSNGPTVQFVESRESQEVLQQMASAFKTLYIFETDDF VDAKVAMENRKYQEARNKFHALVNKYASTLSIKDSLSARAAVYELECAMRMMDWAGVKGLAAKFPVRGANLSPSAQNDLE VAKIMALIPDKDWNGVKSRAGSFLATKKNATRLQQARMKYALGAAAMVAQDWNKALDYFAEALVLLHGSDEELASACVAR SLDAYLRMPDVVKFFENPVVSSAVESRKNNPEAVIPDSRLKSRPVPVKEAAALYRLHELMFPDRKLPAKYDGFAVSYKHP AAVAPAKAPDQAPAQPQNKQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37405; Mature: 37405
Theoretical pI: Translated: 9.90; Mature: 9.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLAGLSSLVPSMAQNAQNPQRLRARVAAPTIKNGRPTDIYILSSNGPTVQFVESRESQE CCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEECCCCHHH VLQQMASAFKTLYIFETDDFVDAKVAMENRKYQEARNKFHALVNKYASTLSIKDSLSARA HHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVYELECAMRMMDWAGVKGLAAKFPVRGANLSPSAQNDLEVAKIMALIPDKDWNGVKSRA HHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHC GSFLATKKNATRLQQARMKYALGAAAMVAQDWNKALDYFAEALVLLHGSDEELASACVAR CCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH SLDAYLRMPDVVKFFENPVVSSAVESRKNNPEAVIPDSRLKSRPVPVKEAAALYRLHELM HHHHHHCCHHHHHHHHCHHHHHHHHHHCCCCCEECCCHHHCCCCCCHHHHHHHHHHHHHH FPDRKLPAKYDGFAVSYKHPAAVAPAKAPDQAPAQPQNKQ CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MVLAGLSSLVPSMAQNAQNPQRLRARVAAPTIKNGRPTDIYILSSNGPTVQFVESRESQE CCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEECCCCHHH VLQQMASAFKTLYIFETDDFVDAKVAMENRKYQEARNKFHALVNKYASTLSIKDSLSARA HHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVYELECAMRMMDWAGVKGLAAKFPVRGANLSPSAQNDLEVAKIMALIPDKDWNGVKSRA HHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHC GSFLATKKNATRLQQARMKYALGAAAMVAQDWNKALDYFAEALVLLHGSDEELASACVAR CCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH SLDAYLRMPDVVKFFENPVVSSAVESRKNNPEAVIPDSRLKSRPVPVKEAAALYRLHELM HHHHHHCCHHHHHHHHCHHHHHHHHHHCCCCCEECCCHHHCCCCCCHHHHHHHHHHHHHH FPDRKLPAKYDGFAVSYKHPAAVAPAKAPDQAPAQPQNKQ CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA