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The map label for this gene is galS [H]

Identifier: 187735024

GI number: 187735024

Start: 608887

End: 610914

Strand: Direct

Name: galS [H]

Synonym: Amuc_0517

Alternate gene names: 187735024

Gene position: 608887-610914 (Clockwise)

Preceding gene: 187735023

Following gene: 187735025

Centisome position: 22.86

GC content: 60.16

Gene sequence:

>2028_bases
ATGAAAGCATTCATGTTCCCAGCCCTTGTTCTGGCGGCCCTGAACATATGGACTGGCGCCGCCCAGCCCCGGACAACCGC
CATTTTACCTGTACCGGGCGAAAAGGCGTGCCGGCTTCCGCTTCCTCCCTACCAGGCCTTTTGCTGGTTTTCAGCGGACC
GCGGCCGCTGGCCCGGAGACGGCAACCGGGTTCTGCCCTGGTTCGGAAGGACGGCCCCCGGCAACCTGCTGGACAGCAAG
CCGAATCCCAGCACCGCCAAACCGGGGGACCATGCCATGTTCGCCCTGTTCCACCTCAAAGACGGCAATTTCATGGCCGT
GCTCCCCGTCGCCGCCCCTGATTCCCTCGCGTGGCTGAAACTTGAAAGGGACGGAACATTCCTTGTGGAAGCCGGTTCGC
TGGGAACTTCCCCCGCCAAACCGCAGGCCGTCCTGGCCGTCACCGCCACGGACAAAGATATTTACCGCGCCTGTTCCGCC
GTATGGGACAAGGCCCTTTCCCTCCCTTTCATCAAGGGCAGAACCTTGCCCCGGGAAAAGAAAATTTATCCGGAACCGTT
CAAGTACCTCGGCTGGTGCAGCTGGGAACAGTATAAAAAGAATATTTCCTCCAAGCTGCTTGAAGAAACGGCCAGAAAAC
TGGAGGCATCCCCCGTCCCCGTCCGGTGGATGCTGGTGGACGACGGATTCCAGACCCAGGAAAGGCTTCAGCTGGTCAGT
TTCCAGCCCCGGCAGGATCAATTCCCCCGGGGCTGGCAGCCCCTGATGAAACACAAAAGCCCCAAATTGAAATGGATGGG
CCTGTGGCACTGCTATTACGGCCTCTGGAACGGCATCCACCCCAGGCACCGTCTGGATGACGAGACTGCCCGCGGTCTGG
TCCGTACCGCCAAAGGGAAAATCCTCCCCGGTGACGGCTCCGGAGGAGCCGGAGCGTTTTATACCCCCTTCCTGCAATCC
GTCAAAGACACCGGATTCGACTTCGTGAAAATTGATGTGCAGGCGGAATACCTGAAGCATGCGGACGGGCTGGACAACCC
GGTCCGCCACAATACCAAGTGCTCGGAAGCCCTGGAACAGGCCTGCCTGAAAACAGGGCTCAGCCTGGTCAACTGCATGG
CGCAGGGTACCGTCAACATTCAGAACACGCGTTACAGCGCGGTCACCCGGTGCAGCATCGACTACAAGCTGGGAGATGAA
GCCATGGCCAAATCCCACATCCTCCAGTCCTACGCCAATACCCTCTGGCTGGGACAGACCGTGTGGCCGGACCATGACAT
GTTCCATTCCACGGATCCCGCCTGCGCCCGCCTCATGGCCGTATCCAAAGCCGTCTCAGGCGGCCCTGTCTATCTTTCAG
ACCCGGCAGACAAACTTAATCCGGAAAACATCATGCCTCTCGTCTGGTCGGACGGTCTTCTGCTGCGCCCGCTGGCTCCC
GCCGTGCCCCTGCCTGATTCCGTCTTTCCGGATGCTCTGAACGAGAACCGCCTGTACCGGGTAATCGCCCCTTTACCCGG
TCAAAGCGCCGCCGTGGTGGTGTACAACCTCAAACATCCTTCCCCGGCGGAACCGGTACGGGGGAAAATTTCCCTGGAGG
ATTATAAAAACGCGGCGGCTCTGCTGAATGGCAATGCGGCGGAAGCCTACGCCTCTCTCCCGGCGGAGGGCATCGCCGCC
TATTCCGCAGAGGGAGGCCGCGCGCTGACTCCGGCACAGCCGGATCTGGATGTAGAGCTGACGGGATTCAAGGACCGCCT
GTTCATCATGGCCCCTATCGTCCAAGGTTGGGCCGTCATCGGAAGGAGGGACAAATTTCTCTCTCCCTGCGCCCTGGTTT
CCGCTCCGGGGTACAGGGAGAACGGCCTCCGCTTCCGCGTGAAGGAATCCGGGCCTGTCGTCATCTGGCGGGGAAAAGGC
CCGGTCAAAGCGGGAAACACCCCCGTCAGGAATCTGGGGAACGGGTTTTATGAATTGCAATTTCCCGTCTCCGACCACCC
CCTGGACATCACTGTAACAGCGGAATAA

Upstream 100 bases:

>100_bases
GGAAAAGCTCTGCCACCCTTTCCGGAAAGAGGCCAAGCACGTTCCTTCCATGATTGTCTTCCGGTTCCCCTGCCCCATTT
CCTAACCCCATGATCATTCC

Downstream 100 bases:

>100_bases
CTCCGGACATTTCCTCTCATTTTTCCTACTTCGTCTCCCATGAACCCGCTTCATCCCCTCCTTGCTTTCTCTCTGTTGCT
TCCGCTCTGCCGGCATTCCA

Product: raffinose synthase

Products: NA

Alternate protein names: Alpha-Gal [H]

Number of amino acids: Translated: 675; Mature: 675

Protein sequence:

>675_residues
MKAFMFPALVLAALNIWTGAAQPRTTAILPVPGEKACRLPLPPYQAFCWFSADRGRWPGDGNRVLPWFGRTAPGNLLDSK
PNPSTAKPGDHAMFALFHLKDGNFMAVLPVAAPDSLAWLKLERDGTFLVEAGSLGTSPAKPQAVLAVTATDKDIYRACSA
VWDKALSLPFIKGRTLPREKKIYPEPFKYLGWCSWEQYKKNISSKLLEETARKLEASPVPVRWMLVDDGFQTQERLQLVS
FQPRQDQFPRGWQPLMKHKSPKLKWMGLWHCYYGLWNGIHPRHRLDDETARGLVRTAKGKILPGDGSGGAGAFYTPFLQS
VKDTGFDFVKIDVQAEYLKHADGLDNPVRHNTKCSEALEQACLKTGLSLVNCMAQGTVNIQNTRYSAVTRCSIDYKLGDE
AMAKSHILQSYANTLWLGQTVWPDHDMFHSTDPACARLMAVSKAVSGGPVYLSDPADKLNPENIMPLVWSDGLLLRPLAP
AVPLPDSVFPDALNENRLYRVIAPLPGQSAAVVVYNLKHPSPAEPVRGKISLEDYKNAAALLNGNAAEAYASLPAEGIAA
YSAEGGRALTPAQPDLDVELTGFKDRLFIMAPIVQGWAVIGRRDKFLSPCALVSAPGYRENGLRFRVKESGPVVIWRGKG
PVKAGNTPVRNLGNGFYELQFPVSDHPLDITVTAE

Sequences:

>Translated_675_residues
MKAFMFPALVLAALNIWTGAAQPRTTAILPVPGEKACRLPLPPYQAFCWFSADRGRWPGDGNRVLPWFGRTAPGNLLDSK
PNPSTAKPGDHAMFALFHLKDGNFMAVLPVAAPDSLAWLKLERDGTFLVEAGSLGTSPAKPQAVLAVTATDKDIYRACSA
VWDKALSLPFIKGRTLPREKKIYPEPFKYLGWCSWEQYKKNISSKLLEETARKLEASPVPVRWMLVDDGFQTQERLQLVS
FQPRQDQFPRGWQPLMKHKSPKLKWMGLWHCYYGLWNGIHPRHRLDDETARGLVRTAKGKILPGDGSGGAGAFYTPFLQS
VKDTGFDFVKIDVQAEYLKHADGLDNPVRHNTKCSEALEQACLKTGLSLVNCMAQGTVNIQNTRYSAVTRCSIDYKLGDE
AMAKSHILQSYANTLWLGQTVWPDHDMFHSTDPACARLMAVSKAVSGGPVYLSDPADKLNPENIMPLVWSDGLLLRPLAP
AVPLPDSVFPDALNENRLYRVIAPLPGQSAAVVVYNLKHPSPAEPVRGKISLEDYKNAAALLNGNAAEAYASLPAEGIAA
YSAEGGRALTPAQPDLDVELTGFKDRLFIMAPIVQGWAVIGRRDKFLSPCALVSAPGYRENGLRFRVKESGPVVIWRGKG
PVKAGNTPVRNLGNGFYELQFPVSDHPLDITVTAE
>Mature_675_residues
MKAFMFPALVLAALNIWTGAAQPRTTAILPVPGEKACRLPLPPYQAFCWFSADRGRWPGDGNRVLPWFGRTAPGNLLDSK
PNPSTAKPGDHAMFALFHLKDGNFMAVLPVAAPDSLAWLKLERDGTFLVEAGSLGTSPAKPQAVLAVTATDKDIYRACSA
VWDKALSLPFIKGRTLPREKKIYPEPFKYLGWCSWEQYKKNISSKLLEETARKLEASPVPVRWMLVDDGFQTQERLQLVS
FQPRQDQFPRGWQPLMKHKSPKLKWMGLWHCYYGLWNGIHPRHRLDDETARGLVRTAKGKILPGDGSGGAGAFYTPFLQS
VKDTGFDFVKIDVQAEYLKHADGLDNPVRHNTKCSEALEQACLKTGLSLVNCMAQGTVNIQNTRYSAVTRCSIDYKLGDE
AMAKSHILQSYANTLWLGQTVWPDHDMFHSTDPACARLMAVSKAVSGGPVYLSDPADKLNPENIMPLVWSDGLLLRPLAP
AVPLPDSVFPDALNENRLYRVIAPLPGQSAAVVVYNLKHPSPAEPVRGKISLEDYKNAAALLNGNAAEAYASLPAEGIAA
YSAEGGRALTPAQPDLDVELTGFKDRLFIMAPIVQGWAVIGRRDKFLSPCALVSAPGYRENGLRFRVKESGPVVIWRGKG
PVKAGNTPVRNLGNGFYELQFPVSDHPLDITVTAE

Specific function: Involved in the degradation of various alpha-linked galactosides such as raffinose, stachyose and melibiose [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 36 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR017853
- InterPro:   IPR008811 [H]

Pfam domain/function: PF05691 Raffinose_syn [H]

EC number: =3.2.1.22 [H]

Molecular weight: Translated: 74234; Mature: 74234

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAFMFPALVLAALNIWTGAAQPRTTAILPVPGEKACRLPLPPYQAFCWFSADRGRWPGD
CCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCC
GNRVLPWFGRTAPGNLLDSKPNPSTAKPGDHAMFALFHLKDGNFMAVLPVAAPDSLAWLK
CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCEEEEE
LERDGTFLVEAGSLGTSPAKPQAVLAVTATDKDIYRACSAVWDKALSLPFIKGRTLPREK
EECCCEEEEECCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCEECCCCCCCCC
KIYPEPFKYLGWCSWEQYKKNISSKLLEETARKLEASPVPVRWMLVDDGFQTQERLQLVS
CCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHC
FQPRQDQFPRGWQPLMKHKSPKLKWMGLWHCYYGLWNGIHPRHRLDDETARGLVRTAKGK
CCCCCCCCCCCCHHHHHCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCC
ILPGDGSGGAGAFYTPFLQSVKDTGFDFVKIDVQAEYLKHADGLDNPVRHNTKCSEALEQ
EECCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEHHHHHHCCCCCCCCCCCCHHHHHHHH
ACLKTGLSLVNCMAQGTVNIQNTRYSAVTRCSIDYKLGDEAMAKSHILQSYANTLWLGQT
HHHHHHHHHHHHHHCCCEEEECCCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHEEECCC
VWPDHDMFHSTDPACARLMAVSKAVSGGPVYLSDPADKLNPENIMPLVWSDGLLLRPLAP
CCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCHHHCCCCCCEEEEECCCEEECCCCC
AVPLPDSVFPDALNENRLYRVIAPLPGQSAAVVVYNLKHPSPAEPVRGKISLEDYKNAAA
CCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCEEEHHHHCCEEE
LLNGNAAEAYASLPAEGIAAYSAEGGRALTPAQPDLDVELTGFKDRLFIMAPIVQGWAVI
EECCCHHHHHHHCCHHHHEEECCCCCEEECCCCCCCCEEEECCCCEEEEEEHHHHHHHHC
GRRDKFLSPCALVSAPGYRENGLRFRVKESGPVVIWRGKGPVKAGNTPVRNLGNGFYELQ
CCCCCCCCCCCEECCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCHHHCCCCEEEEE
FPVSDHPLDITVTAE
ECCCCCCEEEEEECC
>Mature Secondary Structure
MKAFMFPALVLAALNIWTGAAQPRTTAILPVPGEKACRLPLPPYQAFCWFSADRGRWPGD
CCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCC
GNRVLPWFGRTAPGNLLDSKPNPSTAKPGDHAMFALFHLKDGNFMAVLPVAAPDSLAWLK
CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCEEEEE
LERDGTFLVEAGSLGTSPAKPQAVLAVTATDKDIYRACSAVWDKALSLPFIKGRTLPREK
EECCCEEEEECCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCEECCCCCCCCC
KIYPEPFKYLGWCSWEQYKKNISSKLLEETARKLEASPVPVRWMLVDDGFQTQERLQLVS
CCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHC
FQPRQDQFPRGWQPLMKHKSPKLKWMGLWHCYYGLWNGIHPRHRLDDETARGLVRTAKGK
CCCCCCCCCCCCHHHHHCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCC
ILPGDGSGGAGAFYTPFLQSVKDTGFDFVKIDVQAEYLKHADGLDNPVRHNTKCSEALEQ
EECCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEHHHHHHCCCCCCCCCCCCHHHHHHHH
ACLKTGLSLVNCMAQGTVNIQNTRYSAVTRCSIDYKLGDEAMAKSHILQSYANTLWLGQT
HHHHHHHHHHHHHHCCCEEEECCCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHEEECCC
VWPDHDMFHSTDPACARLMAVSKAVSGGPVYLSDPADKLNPENIMPLVWSDGLLLRPLAP
CCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCHHHCCCCCCEEEEECCCEEECCCCC
AVPLPDSVFPDALNENRLYRVIAPLPGQSAAVVVYNLKHPSPAEPVRGKISLEDYKNAAA
CCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCEEEHHHHCCEEE
LLNGNAAEAYASLPAEGIAAYSAEGGRALTPAQPDLDVELTGFKDRLFIMAPIVQGWAVI
EECCCHHHHHHHCCHHHHEEECCCCCEEECCCCCCCCEEEECCCCEEEEEEHHHHHHHHC
GRRDKFLSPCALVSAPGYRENGLRFRVKESGPVVIWRGKGPVKAGNTPVRNLGNGFYELQ
CCCCCCCCCCCEECCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCHHHCCCCEEEEE
FPVSDHPLDITVTAE
ECCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11427726 [H]