Click here to switch to the map view.

The map label for this gene is atpD [H]

Identifier: 187735013

GI number: 187735013

Start: 595253

End: 596674

Strand: Reverse

Name: atpD [H]

Synonym: Amuc_0506

Alternate gene names: 187735013

Gene position: 596674-595253 (Counterclockwise)

Preceding gene: 187735014

Following gene: 187735012

Centisome position: 22.4

GC content: 60.27

Gene sequence:

>1422_bases
ATGATGAATAACACAGGCATTCTCGTTCAGATCATCGGCGCTGTGGTCGATGCGGACTTCTCCCAGGCAGAAACGCTCCC
CGCCCTGCTCAATGCGCTGGAAGTGGACTATGAAGTTGACGGCAAGCGCAAGACCCTGGTTCTGGAAGTCCAGCAGCACA
TCGGAGACGGCTGGGTCCGCGCCGTGGCCATGAGTTCTACGGACGGTCTGCGGCGGGGGATGCCGGTGCGCGACACGGGG
CGCCCTATTGAAGTTCCTGTGGGACAGTGCGTGCTGGGACGTATTTTCAATGTGCTGGGGGAAGCTGTGGACGAGCGCGG
CGGACTCTCCTGCGCCGGTATGAAGAGCATCCACCGCGGCGCTCCGCCGTTGGACGAACAATCCACCAGCACGGAAGTGC
TGGAAACGGGCATCAAGGTAATTGACCTTATCTGCCCCTTCCTGAAAGGCGGCAAAATCGGTGCCTTTGGGGGTGCGGGG
GTAGGCAAGACCGTGCTCATCATGGAGTTGATCAACAACATTGCCAAGGCGCGCAGCGGCCTCTCCGTTTTTGCCGGGGT
GGGGGAACGCACCCGTGAGGGGAACGACCTGTACAATGAGATGATAGAATCCGGAGTCATCAACCTGGAGAAACCGGAAG
AATCCAAGGTGGCGCTGGTGTACGGACAGATGAATGAACCCCCCGGCGCCCGTCTGCGCGTAGCCCTGTCCGCCCTGACG
ATGGCGGAATACTTCCGTGACGAGGAGCATAAGGACGTGCTGCTGTTCATTGACAATATTTTCCGTTTCTCCCAGGCGGG
GTCGGAAGTGTCCGCCCTGCTGGGCCGCACGCCGTCCGCCGTGGGTTACCAGCCGAACCTGGCGGAGGAAATGGCGGATC
TTCAGGAACGCATCACCTCCACCAAGCACGGCTCCATCACCTCCATGCAGGCCGTGTATGTTCCTGCGGACGACTTGACG
GACCCGGCCCCGGCCACAACCTTCGCCCACCTGGACTCCACGGTGGTGCTGGAACGCTCTCTGGCGGCCCAGGGGCTCTT
CCCGGCGGTGGAACCGCTGTCTTCCACTTCCAAGGCCCTGGCCCCGGAAATTGTGGGGAATGAGCATTATGAAGTGGCGC
GTGGCGTGCAGATGGTGCTGCAGCGCTACAAGGACCTTCAGGATATGATTGCCATTCTGGGCATGGACGAACTTTCGGAA
GAAGACAAGCTCATCGTGAGCCGCGCCCGCAAGATTCAGCGCTTCCTGACCCAGCCGTTCCATGTGGCGGAAGTCTTTTC
CAGCATTCCCGGTGCCTATGTTCCCGTGGCGGAAACCGTCCGGGGCTTCAAGGAAATCCTGGAAGGCAAGCTGGACATGG
TTCCGGAGGACGCCTTCTTCATGCGCGGCGGCATTGATGACGTCCTCAAGGAAGCCAAATAA

Upstream 100 bases:

>100_bases
CCACGGCTATGCGCGCTATGGAATAACATGGTTCCGCTTTCTTTACCCGCTTTTCAAACAGAACATTCTTTCCTCTCCAT
TTCAACACCAAGTTTTTCCC

Downstream 100 bases:

>100_bases
CCCTTTTCCCGCCGTCCCGAACCATGAGCATGGAGTTCAAAGTCATTACCCCGGATGAAGTGGCGGTTGCCGCTACTGTA
GAATACGTTTATCTGCCCGG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 473; Mature: 473

Protein sequence:

>473_residues
MMNNTGILVQIIGAVVDADFSQAETLPALLNALEVDYEVDGKRKTLVLEVQQHIGDGWVRAVAMSSTDGLRRGMPVRDTG
RPIEVPVGQCVLGRIFNVLGEAVDERGGLSCAGMKSIHRGAPPLDEQSTSTEVLETGIKVIDLICPFLKGGKIGAFGGAG
VGKTVLIMELINNIAKARSGLSVFAGVGERTREGNDLYNEMIESGVINLEKPEESKVALVYGQMNEPPGARLRVALSALT
MAEYFRDEEHKDVLLFIDNIFRFSQAGSEVSALLGRTPSAVGYQPNLAEEMADLQERITSTKHGSITSMQAVYVPADDLT
DPAPATTFAHLDSTVVLERSLAAQGLFPAVEPLSSTSKALAPEIVGNEHYEVARGVQMVLQRYKDLQDMIAILGMDELSE
EDKLIVSRARKIQRFLTQPFHVAEVFSSIPGAYVPVAETVRGFKEILEGKLDMVPEDAFFMRGGIDDVLKEAK

Sequences:

>Translated_473_residues
MMNNTGILVQIIGAVVDADFSQAETLPALLNALEVDYEVDGKRKTLVLEVQQHIGDGWVRAVAMSSTDGLRRGMPVRDTG
RPIEVPVGQCVLGRIFNVLGEAVDERGGLSCAGMKSIHRGAPPLDEQSTSTEVLETGIKVIDLICPFLKGGKIGAFGGAG
VGKTVLIMELINNIAKARSGLSVFAGVGERTREGNDLYNEMIESGVINLEKPEESKVALVYGQMNEPPGARLRVALSALT
MAEYFRDEEHKDVLLFIDNIFRFSQAGSEVSALLGRTPSAVGYQPNLAEEMADLQERITSTKHGSITSMQAVYVPADDLT
DPAPATTFAHLDSTVVLERSLAAQGLFPAVEPLSSTSKALAPEIVGNEHYEVARGVQMVLQRYKDLQDMIAILGMDELSE
EDKLIVSRARKIQRFLTQPFHVAEVFSSIPGAYVPVAETVRGFKEILEGKLDMVPEDAFFMRGGIDDVLKEAK
>Mature_473_residues
MMNNTGILVQIIGAVVDADFSQAETLPALLNALEVDYEVDGKRKTLVLEVQQHIGDGWVRAVAMSSTDGLRRGMPVRDTG
RPIEVPVGQCVLGRIFNVLGEAVDERGGLSCAGMKSIHRGAPPLDEQSTSTEVLETGIKVIDLICPFLKGGKIGAFGGAG
VGKTVLIMELINNIAKARSGLSVFAGVGERTREGNDLYNEMIESGVINLEKPEESKVALVYGQMNEPPGARLRVALSALT
MAEYFRDEEHKDVLLFIDNIFRFSQAGSEVSALLGRTPSAVGYQPNLAEEMADLQERITSTKHGSITSMQAVYVPADDLT
DPAPATTFAHLDSTVVLERSLAAQGLFPAVEPLSSTSKALAPEIVGNEHYEVARGVQMVLQRYKDLQDMIAILGMDELSE
EDKLIVSRARKIQRFLTQPFHVAEVFSSIPGAYVPVAETVRGFKEILEGKLDMVPEDAFFMRGGIDDVLKEAK

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=468, Percent_Identity=67.3076923076923, Blast_Score=627, Evalue=1e-180,
Organism=Homo sapiens, GI19913424, Length=316, Percent_Identity=28.4810126582279, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI19913426, Length=407, Percent_Identity=24.3243243243243, Blast_Score=106, Evalue=5e-23,
Organism=Homo sapiens, GI19913428, Length=372, Percent_Identity=25.2688172043011, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI50345984, Length=411, Percent_Identity=23.1143552311436, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI4757810, Length=411, Percent_Identity=23.1143552311436, Blast_Score=91, Evalue=2e-18,
Organism=Escherichia coli, GI1790170, Length=469, Percent_Identity=66.0980810234542, Blast_Score=613, Evalue=1e-177,
Organism=Escherichia coli, GI1788251, Length=316, Percent_Identity=29.1139240506329, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1790172, Length=365, Percent_Identity=25.7534246575342, Blast_Score=109, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI25144756, Length=471, Percent_Identity=66.6666666666667, Blast_Score=633, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=316, Percent_Identity=29.1139240506329, Blast_Score=108, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI17570191, Length=408, Percent_Identity=24.7549019607843, Blast_Score=101, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17510931, Length=360, Percent_Identity=25, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI71988080, Length=403, Percent_Identity=22.8287841191067, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI71988063, Length=403, Percent_Identity=22.8287841191067, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI71988074, Length=375, Percent_Identity=21.6, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322581, Length=465, Percent_Identity=67.741935483871, Blast_Score=618, Evalue=1e-178,
Organism=Saccharomyces cerevisiae, GI6319603, Length=413, Percent_Identity=24.6973365617433, Blast_Score=102, Evalue=2e-22,
Organism=Saccharomyces cerevisiae, GI6319370, Length=377, Percent_Identity=25.1989389920424, Blast_Score=97, Evalue=5e-21,
Organism=Saccharomyces cerevisiae, GI6320016, Length=260, Percent_Identity=27.6923076923077, Blast_Score=77, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24638766, Length=468, Percent_Identity=66.2393162393162, Blast_Score=618, Evalue=1e-177,
Organism=Drosophila melanogaster, GI28574560, Length=467, Percent_Identity=64.0256959314775, Blast_Score=590, Evalue=1e-169,
Organism=Drosophila melanogaster, GI20129479, Length=344, Percent_Identity=27.6162790697674, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24583988, Length=350, Percent_Identity=27.1428571428571, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24583986, Length=350, Percent_Identity=27.1428571428571, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24583984, Length=350, Percent_Identity=27.1428571428571, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24583992, Length=319, Percent_Identity=27.8996865203762, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI281361666, Length=361, Percent_Identity=24.9307479224377, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24646341, Length=361, Percent_Identity=24.9307479224377, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI17136796, Length=361, Percent_Identity=24.9307479224377, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24658560, Length=379, Percent_Identity=23.2189973614776, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24638768, Length=97, Percent_Identity=52.5773195876289, Blast_Score=92, Evalue=6e-19,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 51245; Mature: 51245

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNNTGILVQIIGAVVDADFSQAETLPALLNALEVDYEVDGKRKTLVLEVQQHIGDGWVR
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEECCCCCEEHEEHHHHHCCHHHH
AVAMSSTDGLRRGMPVRDTGRPIEVPVGQCVLGRIFNVLGEAVDERGGLSCAGMKSIHRG
HHHCCCCCHHHCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
APPLDEQSTSTEVLETGIKVIDLICPFLKGGKIGAFGGAGVGKTVLIMELINNIAKARSG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
LSVFAGVGERTREGNDLYNEMIESGVINLEKPEESKVALVYGQMNEPPGARLRVALSALT
CHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH
MAEYFRDEEHKDVLLFIDNIFRFSQAGSEVSALLGRTPSAVGYQPNLAEEMADLQERITS
HHHHHCCCCCCEEEHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC
TKHGSITSMQAVYVPADDLTDPAPATTFAHLDSTVVLERSLAAQGLFPAVEPLSSTSKAL
CCCCCCEEEEEEEECCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
APEIVGNEHYEVARGVQMVLQRYKDLQDMIAILGMDELSEEDKLIVSRARKIQRFLTQPF
CHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHCCCH
HVAEVFSSIPGAYVPVAETVRGFKEILEGKLDMVPEDAFFMRGGIDDVLKEAK
HHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHCCCCCCHHHHHCCHHHHHHCCC
>Mature Secondary Structure
MMNNTGILVQIIGAVVDADFSQAETLPALLNALEVDYEVDGKRKTLVLEVQQHIGDGWVR
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEECCCCCEEHEEHHHHHCCHHHH
AVAMSSTDGLRRGMPVRDTGRPIEVPVGQCVLGRIFNVLGEAVDERGGLSCAGMKSIHRG
HHHCCCCCHHHCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
APPLDEQSTSTEVLETGIKVIDLICPFLKGGKIGAFGGAGVGKTVLIMELINNIAKARSG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
LSVFAGVGERTREGNDLYNEMIESGVINLEKPEESKVALVYGQMNEPPGARLRVALSALT
CHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH
MAEYFRDEEHKDVLLFIDNIFRFSQAGSEVSALLGRTPSAVGYQPNLAEEMADLQERITS
HHHHHCCCCCCEEEHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC
TKHGSITSMQAVYVPADDLTDPAPATTFAHLDSTVVLERSLAAQGLFPAVEPLSSTSKAL
CCCCCCEEEEEEEECCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
APEIVGNEHYEVARGVQMVLQRYKDLQDMIAILGMDELSEEDKLIVSRARKIQRFLTQPF
CHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHCCCH
HVAEVFSSIPGAYVPVAETVRGFKEILEGKLDMVPEDAFFMRGGIDDVLKEAK
HHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHCCCCCCHHHHHCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA