| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is menB [H]
Identifier: 187734859
GI number: 187734859
Start: 415130
End: 415954
Strand: Direct
Name: menB [H]
Synonym: Amuc_0351
Alternate gene names: 187734859
Gene position: 415130-415954 (Clockwise)
Preceding gene: 187734851
Following gene: 187734860
Centisome position: 15.58
GC content: 61.09
Gene sequence:
>825_bases ATGAGCGCACAATGGATCACCGCCAAGGAATACACGGACATCAAGTATGAAACAACGGACAACGGCAGCATCGCAAAAAT CACGATCAACCGCCCCCACGTCCGCAATGCGTTCCGTCCCCTGACCGTGCATGAAATGCTCAACGCCCTGAACGCCGCTC ATGAAGACCCCAAGGTGGGCGTGGTCATCCTGACCGGGGAAGGCCCGGACGCTTTCTGCTCCGGAGGCGACCAGAAAGTG CGCGGAAATGCCGGCTACATCGGTGAAGACGGCGTGCCGCGCCTGAACATTCTGGACGTGCAGCGCACCATCCGCACCAT GCCCAAGCCCGTCGTCGCCATGGTGGCCGGATACGCCATCGGCGGAGGTCACGTCCTCCACGTCGTCTGTGACCTCACCA TTGCCGCGGACAACGCCAAATTCGGACAGACAGGGCCCAAAGTGGGCTCTTTTGACGGAGGCCTCGGCTCCTCCTACCTG GCGCGCATTGTGGGCCAGAAAAAAGCGCGGGAAATCTGGTACCTGTGCAGGCAGTACGATGCCCGGCAGGCGCTGGACAT GGGCCTGGTCAATACCGTGGTTCCCCTGGAGGACCTGGAGGAGGAAACGCTCTCCTGGTGCCGCCAGATGCTCCGCCACA GCCCTCTGGCCCTGCGCTGCCTGAAGGCATCCCTGAACGCCGACTGCGACGGGCAGATGGGCCTGCTGGACCTGGCCGGC AACGCCACCCTGCTCTATTATATGAGCGAGGAAGCGAAGGAAGGCAAAAACGCCTTCGTTGAAAAACGCGCTCCGGATTT TTCCAAATTCCCCAGACTTCCGTAA
Upstream 100 bases:
>100_bases CGGCCGCAGCACCGCCCCATCCCCCGCAGGTTCCGGACATACCCGGAAGGCGGCGCATTTTAGGCTTCCCATTGCCGGGC GCCTTATTAAAGTAATCCGT
Downstream 100 bases:
>100_bases CCTCCCCCTCCTCCGCACCATGGCACCCAGCTCCGACAATGAAGGCGCCCCCCGGAACGGCACCGCCGGCAGGGAATCCC TGCGCGACCTGCCGGAACAT
Product: naphthoate synthase
Products: NA
Alternate protein names: DHNA-CoA synthase [H]
Number of amino acids: Translated: 274; Mature: 273
Protein sequence:
>274_residues MSAQWITAKEYTDIKYETTDNGSIAKITINRPHVRNAFRPLTVHEMLNALNAAHEDPKVGVVILTGEGPDAFCSGGDQKV RGNAGYIGEDGVPRLNILDVQRTIRTMPKPVVAMVAGYAIGGGHVLHVVCDLTIAADNAKFGQTGPKVGSFDGGLGSSYL ARIVGQKKAREIWYLCRQYDARQALDMGLVNTVVPLEDLEEETLSWCRQMLRHSPLALRCLKASLNADCDGQMGLLDLAG NATLLYYMSEEAKEGKNAFVEKRAPDFSKFPRLP
Sequences:
>Translated_274_residues MSAQWITAKEYTDIKYETTDNGSIAKITINRPHVRNAFRPLTVHEMLNALNAAHEDPKVGVVILTGEGPDAFCSGGDQKV RGNAGYIGEDGVPRLNILDVQRTIRTMPKPVVAMVAGYAIGGGHVLHVVCDLTIAADNAKFGQTGPKVGSFDGGLGSSYL ARIVGQKKAREIWYLCRQYDARQALDMGLVNTVVPLEDLEEETLSWCRQMLRHSPLALRCLKASLNADCDGQMGLLDLAG NATLLYYMSEEAKEGKNAFVEKRAPDFSKFPRLP >Mature_273_residues SAQWITAKEYTDIKYETTDNGSIAKITINRPHVRNAFRPLTVHEMLNALNAAHEDPKVGVVILTGEGPDAFCSGGDQKVR GNAGYIGEDGVPRLNILDVQRTIRTMPKPVVAMVAGYAIGGGHVLHVVCDLTIAADNAKFGQTGPKVGSFDGGLGSSYLA RIVGQKKAREIWYLCRQYDARQALDMGLVNTVVPLEDLEEETLSWCRQMLRHSPLALRCLKASLNADCDGQMGLLDLAGN ATLLYYMSEEAKEGKNAFVEKRAPDFSKFPRLP
Specific function: Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA) [H]
COG id: COG0447
COG function: function code H; Dihydroxynaphthoic acid synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]
Homologues:
Organism=Homo sapiens, GI194097323, Length=250, Percent_Identity=33.2, Blast_Score=120, Evalue=1e-27, Organism=Homo sapiens, GI4502327, Length=263, Percent_Identity=30.4182509505703, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI31542718, Length=249, Percent_Identity=29.3172690763052, Blast_Score=88, Evalue=8e-18, Organism=Homo sapiens, GI45643119, Length=208, Percent_Identity=29.3269230769231, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI260275230, Length=208, Percent_Identity=29.3269230769231, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI260274832, Length=208, Percent_Identity=29.3269230769231, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI213417737, Length=225, Percent_Identity=26.6666666666667, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI157694516, Length=225, Percent_Identity=26.6666666666667, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI4757966, Length=222, Percent_Identity=27.4774774774775, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI51538581, Length=222, Percent_Identity=27.4774774774775, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI25453481, Length=222, Percent_Identity=27.4774774774775, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI51538573, Length=222, Percent_Identity=27.4774774774775, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI70995211, Length=237, Percent_Identity=29.1139240506329, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI1788597, Length=273, Percent_Identity=72.8937728937729, Blast_Score=412, Evalue=1e-116, Organism=Escherichia coli, GI1787659, Length=245, Percent_Identity=33.469387755102, Blast_Score=118, Evalue=5e-28, Organism=Escherichia coli, GI221142681, Length=256, Percent_Identity=32.8125, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI87082183, Length=251, Percent_Identity=28.6852589641434, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1787660, Length=251, Percent_Identity=29.8804780876494, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1788682, Length=201, Percent_Identity=27.363184079602, Blast_Score=67, Evalue=1e-12, Organism=Caenorhabditis elegans, GI25145438, Length=255, Percent_Identity=30.1960784313725, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI17540714, Length=214, Percent_Identity=31.3084112149533, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17554946, Length=270, Percent_Identity=28.1481481481481, Blast_Score=104, Evalue=4e-23, Organism=Caenorhabditis elegans, GI17560910, Length=206, Percent_Identity=27.6699029126214, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17535521, Length=215, Percent_Identity=26.046511627907, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17536985, Length=221, Percent_Identity=25.7918552036199, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17549921, Length=198, Percent_Identity=26.2626262626263, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17534483, Length=235, Percent_Identity=27.6595744680851, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17540306, Length=267, Percent_Identity=27.7153558052434, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI20129971, Length=259, Percent_Identity=32.046332046332, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI24653477, Length=259, Percent_Identity=32.046332046332, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI24653139, Length=269, Percent_Identity=28.2527881040892, Blast_Score=98, Evalue=5e-21, Organism=Drosophila melanogaster, GI21357171, Length=182, Percent_Identity=30.2197802197802, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI19922422, Length=249, Percent_Identity=25.3012048192771, Blast_Score=65, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014748 - InterPro: IPR001753 - InterPro: IPR018376 - InterPro: IPR010198 [H]
Pfam domain/function: PF00378 ECH [H]
EC number: =4.1.3.36 [H]
Molecular weight: Translated: 29952; Mature: 29820
Theoretical pI: Translated: 7.09; Mature: 7.09
Prosite motif: PS00166 ENOYL_COA_HYDRATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAQWITAKEYTDIKYETTDNGSIAKITINRPHVRNAFRPLTVHEMLNALNAAHEDPKVG CCCCEEECCCCCCEEEEECCCCCEEEEEECCCHHHHHCCCCHHHHHHHHHHHCCCCCCEE VVILTGEGPDAFCSGGDQKVRGNAGYIGEDGVPRLNILDVQRTIRTMPKPVVAMVAGYAI EEEEECCCCCHHHCCCCCEECCCCCEECCCCCCCEEEHHHHHHHHHCCHHHHHHHHHHCC GGGHVLHVVCDLTIAADNAKFGQTGPKVGSFDGGLGSSYLARIVGQKKAREIWYLCRQYD CCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH ARQALDMGLVNTVVPLEDLEEETLSWCRQMLRHSPLALRCLKASLNADCDGQMGLLDLAG HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEECC NATLLYYMSEEAKEGKNAFVEKRAPDFSKFPRLP CEEEEEEECCHHHCHHHHHHHCCCCCHHHCCCCC >Mature Secondary Structure SAQWITAKEYTDIKYETTDNGSIAKITINRPHVRNAFRPLTVHEMLNALNAAHEDPKVG CCCEEECCCCCCEEEEECCCCCEEEEEECCCHHHHHCCCCHHHHHHHHHHHCCCCCCEE VVILTGEGPDAFCSGGDQKVRGNAGYIGEDGVPRLNILDVQRTIRTMPKPVVAMVAGYAI EEEEECCCCCHHHCCCCCEECCCCCEECCCCCCCEEEHHHHHHHHHCCHHHHHHHHHHCC GGGHVLHVVCDLTIAADNAKFGQTGPKVGSFDGGLGSSYLARIVGQKKAREIWYLCRQYD CCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH ARQALDMGLVNTVVPLEDLEEETLSWCRQMLRHSPLALRCLKASLNADCDGQMGLLDLAG HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEECC NATLLYYMSEEAKEGKNAFVEKRAPDFSKFPRLP CEEEEEEECCHHHCHHHHHHHCCCCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]