| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is tgt [H]
Identifier: 187734787
GI number: 187734787
Start: 336643
End: 337776
Strand: Reverse
Name: tgt [H]
Synonym: Amuc_0276
Alternate gene names: 187734787
Gene position: 337776-336643 (Counterclockwise)
Preceding gene: 187734788
Following gene: 187734786
Centisome position: 12.68
GC content: 57.5
Gene sequence:
>1134_bases ATGCCTTTTATACTTCATCAGAAAGATTCCTCCACGGCTGCGCGCCTGGGGTCGCTTGAGTTGCCGCATGGACGGGTTCC CACCCCCATTTTCATGCCGGTGGGAACGCAGGGTTCCGTGAAAACCATGCATCCGCAGGATTTGGAGATGCTGGGAGCTG AGATTATTCTGGGAAATACCTATCATTTGTCCCTGCGCCCCGGTTCCGCTTTAATTAGGCAAATGGGCGGATTACACAAA TTTTCCTCCTGGAACCGCCCTATTTTGACGGATTCCGGCGGGTTCCAGGTCTGGTCTCTTGCCAAGCTCCGTAAAATTAC GGAAGAAGGGGTGCGTTTCCAGAACCATTTGGACGGGGCGTACATGATGCTGAGCCCGGAGCGGTCCATGGAGATCCAGG CGGACCTGGGCAGTGATATCGCCATGCTATTTGACGAGTGCCCCCCTTATCCCTGCGACAGGAAGTACGCGGAAGCCTCC CTGGGGTACACGCTTCGTTGGGCCCGCCGCTGCAAGGCGTGGGTGCAGGAACATCGCCCCCGTTCCGGGGAAGGGCGTCA GCACCATTTCGGTATTGTGCAGGGTTCCGTGTATGCGGATTTAAGAAAGAAGTGCGCGGAAGAACTGGCCGCCATGGATT TTGACGGGTACGCCATCGGCGGCGTTTCCGTGGGAGAGCCGGAGGATGAAATGCTCCGCGCCATTGATCATTCCGCTCCC TGGCTGCCGGAGGAGAAGCCCCGGTACGCCATGGGGCTGGGCACCCCCCCCCAATTGCTGGAAATGGTTGCCCGCGGCGT GGATATGTTTGACTGCGTAATGCCTACCCGCCTGGCTCGCCACGGCGTGGCGCTGACTCCGGACGGCCCCATGCATATCA AGAATCAGCGCTGGGCGACGGATTCCCGCCCAATTGACCCGGAGGGACATCCGCATGTCACGCAATTTTCCCGCGCTTAC GTGCGGCATTTGTTTAAAGCCGGTGAAATACTCGCTTTAAGATTGCTTTCTTTTCAGAATCTGGAATTCTATCTCCGGCT GATGGCCCAGGCGCGCGAGGCCATAGCCGCCGGCACGTTCGGTCCCTTCAAGGATTCGTTTATCGCGCGGTATAAAGCAA ACGACATTTTATGA
Upstream 100 bases:
>100_bases AATTTTTTTATCCCCGTACGGATTTCCAGCTTCAATGGGAGGCCATGAGAAAGCCGATTTACCGCGCCCGCTTTATCAAA TTGCAGAAAGTCTGATTCCG
Downstream 100 bases:
>100_bases ATATCTTTATGTTAGCACAGGCTCAGGATGCGGCGGGCGCCGCCGGGCAGGAACCCGCAAATATGTTTCAGCAGATTCTC GCCAGCCCCATGTTCATGTT
Product: queuine tRNA-ribosyltransferase
Products: NA
Alternate protein names: Guanine insertion enzyme; tRNA-guanine transglycosylase [H]
Number of amino acids: Translated: 377; Mature: 376
Protein sequence:
>377_residues MPFILHQKDSSTAARLGSLELPHGRVPTPIFMPVGTQGSVKTMHPQDLEMLGAEIILGNTYHLSLRPGSALIRQMGGLHK FSSWNRPILTDSGGFQVWSLAKLRKITEEGVRFQNHLDGAYMMLSPERSMEIQADLGSDIAMLFDECPPYPCDRKYAEAS LGYTLRWARRCKAWVQEHRPRSGEGRQHHFGIVQGSVYADLRKKCAEELAAMDFDGYAIGGVSVGEPEDEMLRAIDHSAP WLPEEKPRYAMGLGTPPQLLEMVARGVDMFDCVMPTRLARHGVALTPDGPMHIKNQRWATDSRPIDPEGHPHVTQFSRAY VRHLFKAGEILALRLLSFQNLEFYLRLMAQAREAIAAGTFGPFKDSFIARYKANDIL
Sequences:
>Translated_377_residues MPFILHQKDSSTAARLGSLELPHGRVPTPIFMPVGTQGSVKTMHPQDLEMLGAEIILGNTYHLSLRPGSALIRQMGGLHK FSSWNRPILTDSGGFQVWSLAKLRKITEEGVRFQNHLDGAYMMLSPERSMEIQADLGSDIAMLFDECPPYPCDRKYAEAS LGYTLRWARRCKAWVQEHRPRSGEGRQHHFGIVQGSVYADLRKKCAEELAAMDFDGYAIGGVSVGEPEDEMLRAIDHSAP WLPEEKPRYAMGLGTPPQLLEMVARGVDMFDCVMPTRLARHGVALTPDGPMHIKNQRWATDSRPIDPEGHPHVTQFSRAY VRHLFKAGEILALRLLSFQNLEFYLRLMAQAREAIAAGTFGPFKDSFIARYKANDIL >Mature_376_residues PFILHQKDSSTAARLGSLELPHGRVPTPIFMPVGTQGSVKTMHPQDLEMLGAEIILGNTYHLSLRPGSALIRQMGGLHKF SSWNRPILTDSGGFQVWSLAKLRKITEEGVRFQNHLDGAYMMLSPERSMEIQADLGSDIAMLFDECPPYPCDRKYAEASL GYTLRWARRCKAWVQEHRPRSGEGRQHHFGIVQGSVYADLRKKCAEELAAMDFDGYAIGGVSVGEPEDEMLRAIDHSAPW LPEEKPRYAMGLGTPPQLLEMVARGVDMFDCVMPTRLARHGVALTPDGPMHIKNQRWATDSRPIDPEGHPHVTQFSRAYV RHLFKAGEILALRLLSFQNLEFYLRLMAQAREAIAAGTFGPFKDSFIARYKANDIL
Specific function: Exchanges the guanine residue with 7-aminomethyl-7- deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hyper
COG id: COG0343
COG function: function code J; Queuine/archaeosine tRNA-ribosyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the queuine tRNA-ribosyltransferase family [H]
Homologues:
Organism=Homo sapiens, GI13654276, Length=360, Percent_Identity=44.4444444444444, Blast_Score=296, Evalue=2e-80, Organism=Escherichia coli, GI1786607, Length=371, Percent_Identity=50.4043126684636, Blast_Score=365, Evalue=1e-102, Organism=Caenorhabditis elegans, GI17544680, Length=360, Percent_Identity=40.5555555555556, Blast_Score=259, Evalue=1e-69, Organism=Drosophila melanogaster, GI19920510, Length=363, Percent_Identity=41.8732782369146, Blast_Score=283, Evalue=1e-76,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004803 - InterPro: IPR002616 [H]
Pfam domain/function: PF01702 TGT [H]
EC number: =2.4.2.29 [H]
Molecular weight: Translated: 42312; Mature: 42181
Theoretical pI: Translated: 7.71; Mature: 7.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFILHQKDSSTAARLGSLELPHGRVPTPIFMPVGTQGSVKTMHPQDLEMLGAEIILGNT CCCEEECCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCCEECCCCHHHHHHCCEEEECCE YHLSLRPGSALIRQMGGLHKFSSWNRPILTDSGGFQVWSLAKLRKITEEGVRFQNHLDGA EEEEECCHHHHHHHHCCCHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCE YMMLSPERSMEIQADLGSDIAMLFDECPPYPCDRKYAEASLGYTLRWARRCKAWVQEHRP EEEECCCCCCEEEECCCCHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCC RSGEGRQHHFGIVQGSVYADLRKKCAEELAAMDFDGYAIGGVSVGEPEDEMLRAIDHSAP CCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHCCCC WLPEEKPRYAMGLGTPPQLLEMVARGVDMFDCVMPTRLARHGVALTPDGPMHIKNQRWAT CCCCCCCCEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCEEECCCCCCEECCCCCCC DSRPIDPEGHPHVTQFSRAYVRHLFKAGEILALRLLSFQNLEFYLRLMAQAREAIAAGTF CCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC GPFKDSFIARYKANDIL CCCHHHHHHHHHCCCCC >Mature Secondary Structure PFILHQKDSSTAARLGSLELPHGRVPTPIFMPVGTQGSVKTMHPQDLEMLGAEIILGNT CCEEECCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCCEECCCCHHHHHHCCEEEECCE YHLSLRPGSALIRQMGGLHKFSSWNRPILTDSGGFQVWSLAKLRKITEEGVRFQNHLDGA EEEEECCHHHHHHHHCCCHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCE YMMLSPERSMEIQADLGSDIAMLFDECPPYPCDRKYAEASLGYTLRWARRCKAWVQEHRP EEEECCCCCCEEEECCCCHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCC RSGEGRQHHFGIVQGSVYADLRKKCAEELAAMDFDGYAIGGVSVGEPEDEMLRAIDHSAP CCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHCCCC WLPEEKPRYAMGLGTPPQLLEMVARGVDMFDCVMPTRLARHGVALTPDGPMHIKNQRWAT CCCCCCCCEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCEEECCCCCCEECCCCCCC DSRPIDPEGHPHVTQFSRAYVRHLFKAGEILALRLLSFQNLEFYLRLMAQAREAIAAGTF CCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC GPFKDSFIARYKANDIL CCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11997336 [H]