Click here to switch to the map view.

The map label for this gene is ybeT [H]

Identifier: 187734737

GI number: 187734737

Start: 281234

End: 282277

Strand: Reverse

Name: ybeT [H]

Synonym: Amuc_0225

Alternate gene names: 187734737

Gene position: 282277-281234 (Counterclockwise)

Preceding gene: 187734739

Following gene: 187734735

Centisome position: 10.6

GC content: 59.67

Gene sequence:

>1044_bases
ATGGTAATGGCCATGATGAAAAAAGTTGTCTCTTTATGTGCGGCTTCCTCCGCCTTCTTTTTTTTGTGCGGATGTGACCG
CGCCCCTTCTTCCGGGGAAAAGCGGGCTGCTTCTTCTGCGGAACGGGAAAAGCCGTCTGCGGTGCGGAAAGAGGCGGAGA
CATGGAGGGAGCGTCTGGACGCTGCTGTTGCCGGCTCCGTCCGCGAGAAGGAAAATGGTAGCGAGCATGTGAAAGCCCTC
AATGATGTGGCTGCCCTGTATGCGGAGGGATTGCAGAATGGCTGGGTTCATCCGCTGGATGTGCGGGCCTGGTGTGATTC
CGTGGCGGAGGCCGGTTCCGGGTATTCCGGGGAAACGGTCATCGGCGCCATGTTCCTGTATGGGACGGGAATCAAGCGTG
ATGCCGTAGCGGCCAGGGAGTGGTTTGAGTACGGGCTTGCCCGCCCGGGGACCCAGCGGGGAAACGCTCTGTACATGTTG
GGAATGATGTATTTCAAGGGGGATGGCGCGGATCAGGACCTGAATAAGGCGCTGGGGCTGTGGCACAAGGCAGCGGATGA
GGAACATCCGGCAGCCATGGGGCTGCTGGGCCGGGCTTACATGGAGGGGAAGATGGGGGTTGAGAAGGATGCCGCTTCCG
GCCTGGCGCTGCTGGAGAAGGCCGCCAACGGGGGGAATACGCCTTCGTCCGTCTATCTGGGGAACATTTATGCAAAGGGG
CAGGGGGTGGAGCGGGATATGGAGCGTGCCATGAAGTGGTATGAACAGGCGGCTTCAGCCGGAGACGCCCATTCCCAGTA
TATTGTGGGACTGGCCTGTCTGGAAGGTTCCGGCGTGCCTGTGGATGAGGGCAAGGCGTTCAGCTGGCTCCGGCTGGCCG
CCGGGCAGGACCACGTCAACGCCATGCTGATGCTTTCCGTCTGCTACAGCACAGGAAAAGGGACCCCTCAGAATGCGGAT
ATGGCGGAAGTCTGGAAAAAGAAGGCGCTTCAACTGAATGCGGAACGCGAGGGAAGTTCTGCGCCGCAAACGCAAAAACG
TTAA

Upstream 100 bases:

>100_bases
GCAAAAAGAGGGAATCCGGCTCTTCGGTTTCGCTCTTCCATAGCGTGCGGATGCGGCGTTTCCGTCATTTCTCTTCTTGG
CAGCCTGATGAGGCTGTCTT

Downstream 100 bases:

>100_bases
CTTTCCCGAATTTCCCTGTTCAGAAAATCCAAAGCTTTCCTCCGTTCCAGAATAATGTTTCCCCGGGTGTCCGGAATAAC
CAGCAGGCCGTCCCGGTGTT

Product: Sel1 domain protein repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 347; Mature: 347

Protein sequence:

>347_residues
MVMAMMKKVVSLCAASSAFFFLCGCDRAPSSGEKRAASSAEREKPSAVRKEAETWRERLDAAVAGSVREKENGSEHVKAL
NDVAALYAEGLQNGWVHPLDVRAWCDSVAEAGSGYSGETVIGAMFLYGTGIKRDAVAAREWFEYGLARPGTQRGNALYML
GMMYFKGDGADQDLNKALGLWHKAADEEHPAAMGLLGRAYMEGKMGVEKDAASGLALLEKAANGGNTPSSVYLGNIYAKG
QGVERDMERAMKWYEQAASAGDAHSQYIVGLACLEGSGVPVDEGKAFSWLRLAAGQDHVNAMLMLSVCYSTGKGTPQNAD
MAEVWKKKALQLNAEREGSSAPQTQKR

Sequences:

>Translated_347_residues
MVMAMMKKVVSLCAASSAFFFLCGCDRAPSSGEKRAASSAEREKPSAVRKEAETWRERLDAAVAGSVREKENGSEHVKAL
NDVAALYAEGLQNGWVHPLDVRAWCDSVAEAGSGYSGETVIGAMFLYGTGIKRDAVAAREWFEYGLARPGTQRGNALYML
GMMYFKGDGADQDLNKALGLWHKAADEEHPAAMGLLGRAYMEGKMGVEKDAASGLALLEKAANGGNTPSSVYLGNIYAKG
QGVERDMERAMKWYEQAASAGDAHSQYIVGLACLEGSGVPVDEGKAFSWLRLAAGQDHVNAMLMLSVCYSTGKGTPQNAD
MAEVWKKKALQLNAEREGSSAPQTQKR
>Mature_347_residues
MVMAMMKKVVSLCAASSAFFFLCGCDRAPSSGEKRAASSAEREKPSAVRKEAETWRERLDAAVAGSVREKENGSEHVKAL
NDVAALYAEGLQNGWVHPLDVRAWCDSVAEAGSGYSGETVIGAMFLYGTGIKRDAVAAREWFEYGLARPGTQRGNALYML
GMMYFKGDGADQDLNKALGLWHKAADEEHPAAMGLLGRAYMEGKMGVEKDAASGLALLEKAANGGNTPSSVYLGNIYAKG
QGVERDMERAMKWYEQAASAGDAHSQYIVGLACLEGSGVPVDEGKAFSWLRLAAGQDHVNAMLMLSVCYSTGKGTPQNAD
MAEVWKKKALQLNAEREGSSAPQTQKR

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybeQ [H]

Homologues:

Organism=Homo sapiens, GI151301150, Length=169, Percent_Identity=32.5443786982249, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI19923669, Length=170, Percent_Identity=29.4117647058824, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI33620759, Length=158, Percent_Identity=34.8101265822785, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI1786867, Length=118, Percent_Identity=36.4406779661017, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI87081769, Length=157, Percent_Identity=31.8471337579618, Blast_Score=73, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17563256, Length=144, Percent_Identity=34.0277777777778, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21355295, Length=156, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 37241; Mature: 37241

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVMAMMKKVVSLCAASSAFFFLCGCDRAPSSGEKRAASSAEREKPSAVRKEAETWRERLD
CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
AAVAGSVREKENGSEHVKALNDVAALYAEGLQNGWVHPLDVRAWCDSVAEAGSGYSGETV
HHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHH
IGAMFLYGTGIKRDAVAAREWFEYGLARPGTQRGNALYMLGMMYFKGDGADQDLNKALGL
HHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHCCCCCCCHHHHHHHHH
WHKAADEEHPAAMGLLGRAYMEGKMGVEKDAASGLALLEKAANGGNTPSSVYLGNIYAKG
HHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECEEECC
QGVERDMERAMKWYEQAASAGDAHSQYIVGLACLEGSGVPVDEGKAFSWLRLAAGQDHVN
CCCHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEECCCCCCCCCCCCCHHHHHHCCCHHHH
AMLMLSVCYSTGKGTPQNADMAEVWKKKALQLNAEREGSSAPQTQKR
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVMAMMKKVVSLCAASSAFFFLCGCDRAPSSGEKRAASSAEREKPSAVRKEAETWRERLD
CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
AAVAGSVREKENGSEHVKALNDVAALYAEGLQNGWVHPLDVRAWCDSVAEAGSGYSGETV
HHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHH
IGAMFLYGTGIKRDAVAAREWFEYGLARPGTQRGNALYMLGMMYFKGDGADQDLNKALGL
HHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHCCCCCCCHHHHHHHHH
WHKAADEEHPAAMGLLGRAYMEGKMGVEKDAASGLALLEKAANGGNTPSSVYLGNIYAKG
HHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECEEECC
QGVERDMERAMKWYEQAASAGDAHSQYIVGLACLEGSGVPVDEGKAFSWLRLAAGQDHVN
CCCHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEECCCCCCCCCCCCCHHHHHHCCCHHHH
AMLMLSVCYSTGKGTPQNADMAEVWKKKALQLNAEREGSSAPQTQKR
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]