| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is 187734728
Identifier: 187734728
GI number: 187734728
Start: 267032
End: 269569
Strand: Direct
Name: 187734728
Synonym: Amuc_0216
Alternate gene names: NA
Gene position: 267032-269569 (Clockwise)
Preceding gene: 187734725
Following gene: 187734730
Centisome position: 10.02
GC content: 56.7
Gene sequence:
>2538_bases ATGAAATTTTTCAAGACAACCATTGCCATGGCAACCCTGCTGGGCTGCCTGCCCACATCCCCCGCAGAAGTCGCCTTTCC GGGGCCTGCTCCCGGAACAGCCAGCGCGGAACAATCCGCTTCCGGCTATACTCTTTCCAATAACATCCTGACGGCCAAAT TTATCCTTCGGAACGGAAGTCTTTCCTTCGGAGGAATGACTTCCAAACTGGGCCCCGTCGCCAAGGCAGGGGATGAATTA TTCATCATCAATCTTCAGGACGGACGGAGCATTAAATCCTCCGAGCTGAAAGCGGGAAACGTCAAATTCGTCTCCCTTCA GCCCAACCCCAAGGCCTTCAGGCTGGCTGACCGCTTCCCGGGAAAAGCCGTCAGCGCAACATTCCAGGCTCTGAACGGAA CCCTTCGCATTTCCTGGCGCGCCGTGCTCAGGGACCATTCCCATTACCTGAGGCAGGAACTCCGCCTGGCAAGTATGAAG CCCGTCCAGATGAAAAACATCGTAGCGATGCAATATGACCTGGCAGAAGGGAAAGCCGGGGCACCCTCCGTTTCCGGAAA CGCCAGAGGAGCACTCATCGTCAATGACCTGGCGTTCACCGCCCTGGAAACACCCATGGGCATCAATACCGTGGGAGGCG CCGGAAATATGGAAGGGGGAGAAACCGCCATCTGGAGTGCGGACAAGTGGTCCACAGCTTCATGGACCGGAAATTTCAAT GTTCCCCAGGAACTGAAAAAGCAGTACGGAGAACAGGTTTCCAGTGCGGAAGGCCCGGTTTCCATTGACGGCAAAGGAGC CTGCACCGTCACCTTCCAGTATAAGGGAGGGGACAAGGGCAACAATAAGCTGAACCTTGCCGGCGTGCAGCTCCTCTCTT CCAAGGGGGCCGTTCTTGACTCCGATTTCCACAACGGCAGCACCGGAGATTCCAATGCCGGCAATACTTACACGGTGCAG GTTCCCTCCAGGGGAAATTACATTCTGCGCTACTGGGCCCAGACCAAGAGCGAACCGATTGCCAGCAAGGGGGAAATCAC CTTTTCCCTGCCCGTGCGCACGCTGGAGGAAAAGCAGGAACCCCAGGCGGACGAATCCCGGCTGGCCCAGGGACTCTGGA GCCGTAAAACCACCTTGCAGCCCGGGGAAATATGGGACGTATCCTCCGTTCTCGGAATTTTTGCCCCCGGCCAGAAACGT CGCTCCTTCCTGGCCTATATGGAACGGGAACGCGTGATGCCCTACCGCCCCTTCATCCATTATAATTCCTGGTATGAACT GAACATCAACCGCAACAATGATTCGGACCCCGCCAAGCGCATGACGGAAGAACAATGCCTGGCCGTCCTGAAAGACTGGC AGGAACAGTTTTTCCAGAAGCGCGGCATGTCCATTGACGCCTTCGTCTGGGACGACGGCTGGGATGAATTCAACAGCCTG TGGGATTTCCACAAAATGTTCCCGCAGGGCTTCAAGCGCATTGACGCCGCCGCCGGCAGGCAAAAGGCCGGCATCGGCAC GTGGCTGGGTCCGGTGGGGGGCTACGGAGCCTCCAAGGGCAAGCGTCTCGCTTACTGGAACGTGAAGCATCCGGACAACA AGATCGGTAATTTCCAGCTCTCCAACAAGGAATATTTTGACGCCTTTGTGGGCCGCTGTTCCCAGATGGTGAAGGACTAC AATATGAAGTACTTCAAATTCGACGGCATCAGCACTCACTTCCATGCCAAGGGGCCCGGCAACGAGGAGGATGCGGAAGG CATCATCCGCGTGCTGAACGCCCTGCGCAAGAAAAAGGGGGATCTTTACATCAACTGCACTGTAGGAACCTGGGCATCCC CCTTCTGGTTCCGTTATGCGGATTCCGTATGGAGGCAGGAGAATGACTTCGGCACCATCGGAGCGGGCGACAACCGCGAC AAATGGATCACCTACCGCGACCGCCTGGTGCATGAAGTTTTTGTGCAGGGTTCCCCGCTGATGCCCATCAATTCCATGAT GACTCACGGCCTGATGGTCACTAAATTCGGTCCTCCGGCCTGCATGCCCCGCGATCCGGAAAACGTCAAGAAAGAACTCC GCTGCGCCACGGCTTGCGGCACTTCCCTCCAGGAGCTCTACGTGGATCGGGACCTGATGAGCGCCAACGGCGGAGTTCTG TGGGACGAACTGGCCAAGGGGATCAAGTGGATACGCCGCAATGCGGACGTTTTGGACGATGTGCACTGGGTGGGCGGCAA TCCGTGGAACAAGGAAACTAACGAAGGGGCCGTGTACGGGTGGGCCGCATGGAATAAAAACAAGGCCACCCTGGCTCTCC GCAATTCCTCCGACCAGGAAAAGAGCCTGACCGGAACCCTGCGCAGCATTCTGGATATCCCTGCGAACGTCAAGGGCTCC ATCACCTTCAAGGATTCCTATGACGACCAGCGGACGCTGGACGGCTTCTCCGGCAGTTCCGTAAACATTGACAAGGAAAT CTCCTTCACGTTGAAGCCCTTTGAGGTGCTGGTGTACGAAGGGGGAAAGGTCAAATAA
Upstream 100 bases:
>100_bases CAATAAAAATTAATTTTCTTTCCTTCCATTTCCAGAACCTTCTTCTTGAAAACGAGCCTTCCCCAAATTATCCTCCCGCT AGCTGTAATATTATTTCATC
Downstream 100 bases:
>100_bases ATCAGCCGGCCCACACGCCCGGTCAAAGCCGGAACGGCGTTGGAAAAAACATATTGGGGGAGGCGGGATTCCCGCCTCCC TTCCTTGTTCCCGTGCGGAC
Product: hypothetical protein
Products: NA
Alternate protein names: Sialidase-Like Protein; Alpha-N-Acetylgalactosaminidase
Number of amino acids: Translated: 845; Mature: 845
Protein sequence:
>845_residues MKFFKTTIAMATLLGCLPTSPAEVAFPGPAPGTASAEQSASGYTLSNNILTAKFILRNGSLSFGGMTSKLGPVAKAGDEL FIINLQDGRSIKSSELKAGNVKFVSLQPNPKAFRLADRFPGKAVSATFQALNGTLRISWRAVLRDHSHYLRQELRLASMK PVQMKNIVAMQYDLAEGKAGAPSVSGNARGALIVNDLAFTALETPMGINTVGGAGNMEGGETAIWSADKWSTASWTGNFN VPQELKKQYGEQVSSAEGPVSIDGKGACTVTFQYKGGDKGNNKLNLAGVQLLSSKGAVLDSDFHNGSTGDSNAGNTYTVQ VPSRGNYILRYWAQTKSEPIASKGEITFSLPVRTLEEKQEPQADESRLAQGLWSRKTTLQPGEIWDVSSVLGIFAPGQKR RSFLAYMERERVMPYRPFIHYNSWYELNINRNNDSDPAKRMTEEQCLAVLKDWQEQFFQKRGMSIDAFVWDDGWDEFNSL WDFHKMFPQGFKRIDAAAGRQKAGIGTWLGPVGGYGASKGKRLAYWNVKHPDNKIGNFQLSNKEYFDAFVGRCSQMVKDY NMKYFKFDGISTHFHAKGPGNEEDAEGIIRVLNALRKKKGDLYINCTVGTWASPFWFRYADSVWRQENDFGTIGAGDNRD KWITYRDRLVHEVFVQGSPLMPINSMMTHGLMVTKFGPPACMPRDPENVKKELRCATACGTSLQELYVDRDLMSANGGVL WDELAKGIKWIRRNADVLDDVHWVGGNPWNKETNEGAVYGWAAWNKNKATLALRNSSDQEKSLTGTLRSILDIPANVKGS ITFKDSYDDQRTLDGFSGSSVNIDKEISFTLKPFEVLVYEGGKVK
Sequences:
>Translated_845_residues MKFFKTTIAMATLLGCLPTSPAEVAFPGPAPGTASAEQSASGYTLSNNILTAKFILRNGSLSFGGMTSKLGPVAKAGDEL FIINLQDGRSIKSSELKAGNVKFVSLQPNPKAFRLADRFPGKAVSATFQALNGTLRISWRAVLRDHSHYLRQELRLASMK PVQMKNIVAMQYDLAEGKAGAPSVSGNARGALIVNDLAFTALETPMGINTVGGAGNMEGGETAIWSADKWSTASWTGNFN VPQELKKQYGEQVSSAEGPVSIDGKGACTVTFQYKGGDKGNNKLNLAGVQLLSSKGAVLDSDFHNGSTGDSNAGNTYTVQ VPSRGNYILRYWAQTKSEPIASKGEITFSLPVRTLEEKQEPQADESRLAQGLWSRKTTLQPGEIWDVSSVLGIFAPGQKR RSFLAYMERERVMPYRPFIHYNSWYELNINRNNDSDPAKRMTEEQCLAVLKDWQEQFFQKRGMSIDAFVWDDGWDEFNSL WDFHKMFPQGFKRIDAAAGRQKAGIGTWLGPVGGYGASKGKRLAYWNVKHPDNKIGNFQLSNKEYFDAFVGRCSQMVKDY NMKYFKFDGISTHFHAKGPGNEEDAEGIIRVLNALRKKKGDLYINCTVGTWASPFWFRYADSVWRQENDFGTIGAGDNRD KWITYRDRLVHEVFVQGSPLMPINSMMTHGLMVTKFGPPACMPRDPENVKKELRCATACGTSLQELYVDRDLMSANGGVL WDELAKGIKWIRRNADVLDDVHWVGGNPWNKETNEGAVYGWAAWNKNKATLALRNSSDQEKSLTGTLRSILDIPANVKGS ITFKDSYDDQRTLDGFSGSSVNIDKEISFTLKPFEVLVYEGGKVK >Mature_845_residues MKFFKTTIAMATLLGCLPTSPAEVAFPGPAPGTASAEQSASGYTLSNNILTAKFILRNGSLSFGGMTSKLGPVAKAGDEL FIINLQDGRSIKSSELKAGNVKFVSLQPNPKAFRLADRFPGKAVSATFQALNGTLRISWRAVLRDHSHYLRQELRLASMK PVQMKNIVAMQYDLAEGKAGAPSVSGNARGALIVNDLAFTALETPMGINTVGGAGNMEGGETAIWSADKWSTASWTGNFN VPQELKKQYGEQVSSAEGPVSIDGKGACTVTFQYKGGDKGNNKLNLAGVQLLSSKGAVLDSDFHNGSTGDSNAGNTYTVQ VPSRGNYILRYWAQTKSEPIASKGEITFSLPVRTLEEKQEPQADESRLAQGLWSRKTTLQPGEIWDVSSVLGIFAPGQKR RSFLAYMERERVMPYRPFIHYNSWYELNINRNNDSDPAKRMTEEQCLAVLKDWQEQFFQKRGMSIDAFVWDDGWDEFNSL WDFHKMFPQGFKRIDAAAGRQKAGIGTWLGPVGGYGASKGKRLAYWNVKHPDNKIGNFQLSNKEYFDAFVGRCSQMVKDY NMKYFKFDGISTHFHAKGPGNEEDAEGIIRVLNALRKKKGDLYINCTVGTWASPFWFRYADSVWRQENDFGTIGAGDNRD KWITYRDRLVHEVFVQGSPLMPINSMMTHGLMVTKFGPPACMPRDPENVKKELRCATACGTSLQELYVDRDLMSANGGVL WDELAKGIKWIRRNADVLDDVHWVGGNPWNKETNEGAVYGWAAWNKNKATLALRNSSDQEKSLTGTLRSILDIPANVKGS ITFKDSYDDQRTLDGFSGSSVNIDKEISFTLKPFEVLVYEGGKVK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 93607; Mature: 93607
Theoretical pI: Translated: 9.23; Mature: 9.23
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFFKTTIAMATLLGCLPTSPAEVAFPGPAPGTASAEQSASGYTLSNNILTAKFILRNGS CCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCEEEEEEEEECCC LSFGGMTSKLGPVAKAGDELFIINLQDGRSIKSSELKAGNVKFVSLQPNPKAFRLADRFP CCCCCCCHHCCCHHCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEHHCCC GKAVSATFQALNGTLRISWRAVLRDHSHYLRQELRLASMKPVQMKNIVAMQYDLAEGKAG CHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHCEEEEEEECCCCCCC APSVSGNARGALIVNDLAFTALETPMGINTVGGAGNMEGGETAIWSADKWSTASWTGNFN CCCCCCCCCCEEEEECHHHHHHCCCCCCEECCCCCCCCCCCEEEEECCCCCCCEECCCCC VPQELKKQYGEQVSSAEGPVSIDGKGACTVTFQYKGGDKGNNKLNLAGVQLLSSKGAVLD CHHHHHHHHHHHHHCCCCCEEECCCCEEEEEEEECCCCCCCCEEEEHHEEEECCCCCEEE SDFHNGSTGDSNAGNTYTVQVPSRGNYILRYWAQTKSEPIASKGEITFSLPVRTLEEKQE CCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCEEEEECCHHHHHHCC PQADESRLAQGLWSRKTTLQPGEIWDVSSVLGIFAPGQKRRSFLAYMERERVMPYRPFIH CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEE YNSWYELNINRNNDSDPAKRMTEEQCLAVLKDWQEQFFQKRGMSIDAFVWDDGWDEFNSL ECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHH WDFHKMFPQGFKRIDAAAGRQKAGIGTWLGPVGGYGASKGKRLAYWNVKHPDNKIGNFQL HHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEE SNKEYFDAFVGRCSQMVKDYNMKYFKFDGISTHFHAKGPGNEEDAEGIIRVLNALRKKKG CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCC DLYINCTVGTWASPFWFRYADSVWRQENDFGTIGAGDNRDKWITYRDRLVHEVFVQGSPL CEEEEEEECCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCEEEHHHHHHHHHHHCCCCC MPINSMMTHGLMVTKFGPPACMPRDPENVKKELRCATACGTSLQELYVDRDLMSANGGVL CCHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEE WDELAKGIKWIRRNADVLDDVHWVGGNPWNKETNEGAVYGWAAWNKNKATLALRNSSDQE HHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCHH KSLTGTLRSILDIPANVKGSITFKDSYDDQRTLDGFSGSSVNIDKEISFTLKPFEVLVYE HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHCCCCCCCCEEECCCEEEEECCEEEEEEC GGKVK CCCCC >Mature Secondary Structure MKFFKTTIAMATLLGCLPTSPAEVAFPGPAPGTASAEQSASGYTLSNNILTAKFILRNGS CCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCEEEEEEEEECCC LSFGGMTSKLGPVAKAGDELFIINLQDGRSIKSSELKAGNVKFVSLQPNPKAFRLADRFP CCCCCCCHHCCCHHCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEHHCCC GKAVSATFQALNGTLRISWRAVLRDHSHYLRQELRLASMKPVQMKNIVAMQYDLAEGKAG CHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHCEEEEEEECCCCCCC APSVSGNARGALIVNDLAFTALETPMGINTVGGAGNMEGGETAIWSADKWSTASWTGNFN CCCCCCCCCCEEEEECHHHHHHCCCCCCEECCCCCCCCCCCEEEEECCCCCCCEECCCCC VPQELKKQYGEQVSSAEGPVSIDGKGACTVTFQYKGGDKGNNKLNLAGVQLLSSKGAVLD CHHHHHHHHHHHHHCCCCCEEECCCCEEEEEEEECCCCCCCCEEEEHHEEEECCCCCEEE SDFHNGSTGDSNAGNTYTVQVPSRGNYILRYWAQTKSEPIASKGEITFSLPVRTLEEKQE CCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCEEEEECCHHHHHHCC PQADESRLAQGLWSRKTTLQPGEIWDVSSVLGIFAPGQKRRSFLAYMERERVMPYRPFIH CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEE YNSWYELNINRNNDSDPAKRMTEEQCLAVLKDWQEQFFQKRGMSIDAFVWDDGWDEFNSL ECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHH WDFHKMFPQGFKRIDAAAGRQKAGIGTWLGPVGGYGASKGKRLAYWNVKHPDNKIGNFQL HHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEE SNKEYFDAFVGRCSQMVKDYNMKYFKFDGISTHFHAKGPGNEEDAEGIIRVLNALRKKKG CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCC DLYINCTVGTWASPFWFRYADSVWRQENDFGTIGAGDNRDKWITYRDRLVHEVFVQGSPL CEEEEEEECCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCEEEHHHHHHHHHHHCCCCC MPINSMMTHGLMVTKFGPPACMPRDPENVKKELRCATACGTSLQELYVDRDLMSANGGVL CCHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEE WDELAKGIKWIRRNADVLDDVHWVGGNPWNKETNEGAVYGWAAWNKNKATLALRNSSDQE HHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCHH KSLTGTLRSILDIPANVKGSITFKDSYDDQRTLDGFSGSSVNIDKEISFTLKPFEVLVYE HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHCCCCCCCCEEECCCEEEEECCEEEEEEC GGKVK CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA