| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is mrcA [H]
Identifier: 187734690
GI number: 187734690
Start: 222775
End: 225435
Strand: Direct
Name: mrcA [H]
Synonym: Amuc_0177
Alternate gene names: 187734690
Gene position: 222775-225435 (Clockwise)
Preceding gene: 187734687
Following gene: 187734691
Centisome position: 8.36
GC content: 58.51
Gene sequence:
>2661_bases ATGGGTTTAAACGACAAATCAAGGAAACGAAATGCCGCCTCCTGGAGGGAACGCATCCAAGATGGAGAAATGTCTTCCCG TTCCCAGACGGAACGCAAAAAAAGGCCCCTTCCCCGTCCATCCTATCCCGGGTTGCCGCAGGAAGCTCCTGATCCGGCTG TCATTCCCGGCCCTACCCGCAGAACGGGGAATTCCCGCAACGGTCCTTCCCGGTATGACACGCCGCCCCAGCGACGGACC TCCCGCCCGTCTCCGAAGGAAGAGTACGAAGGCAATCCGGAAAGAGAAGAAGAAAACCGCCCCGCACGCGCAGGAACCAT GCGCAGGCCGCGTTTCACGATTTTCGGAGCCCTGCTGTTTGTCCTGCTGATGCCGTTCCGCTTCATCGGCTCCCTGACGC GGAATATCCGCTGGTTCATTTGCTGGCCCCTGCGCATCCTTCTGGGATGCTGCTTCGTCGGCATTGTGATCGGGGCCATC CTGGTGTTTCTTTACGGCACCATTTCCAACCGCTATGACATTTCCGAGGTAAAGAGCAACATCCCGGAACGCACGGTGAT TCTGGACCGTAAAAACCGGACCATCGGAACCCTGCACGGGGAAAACCGCAAGCGGGTATCCCTTCAGGAAGTTCCTCCCG TTTTTATTGATGCCCTGCTCCTGCGCGAAGACAACCGCTTTTACGACCATGGCGGCGTGGACTGGATAGGCGTGGGCCGC GCCTTTGCGCAGGTGCTCAAGCACAAGAGAGCTACGCAGGGGGCTTCCACCCTGACGATGCAGCTTGCTAAAATTACATA TAACCACCGGGAGCGCAACCTCCATTCCAAACTGACGGAAGTGGCCCTGGCGAAACGCATTGAAGCCACTTATACGAAGG ACGAAATTCTGGAGACTTACATCAACCGTATTTTCTGGGGGCACACCTTCCTGGGGATAGCGGCGGCGGCGCGGGGATAT TACGACAAGGAACCCCGGGATTTATCCCTGGCGGAATGCGCCACCCTGGCCGGCATTATTTACGGCCCAAATGATTTTTC CCCCATCAAACATCCGGAGGAAGCAAAAAAAGTGCGCGATATTGTCCTTGGCCTGCTGAAAAACGAAGGCAAGATTACAG AAGTGCAGTATCAGGCGGCCCTGGCGGAGCCTATCGTCACCCGGACGCCCCAGTCCCGGTCTGAGGAAAATTACGCCATG GGTCTCGTGCGCCGGGAGCTGGACGCCATTCTGGAGGAAGAAGACATCCGCCTGGGAGGGCTGGTGGTGCATACCACATT GGACCTTGATCTGCAGAACGCCACGCTGGACGCCATCAATAAGCACATGGACGCGCTGGAAGCCCGCAAGGATTTCAAGA AGCACCTGGCTTCCCTGCAGGCCAAGAGGGAGAAGAGGGGAATTCTGAAAAACAAGCTGACCACCAAGGCGGAATATGAG GCCTCCCTGGCCGCCTGGAAGGCGCTCCCTGCGGAACAGAAGGAAAAGACGCAGCCGCCGATGCCCAATTACATCCAATC CGCCGCCGTAGTCATGGACAATGCCACGGGGGCTCTTCTGGCCGTCGTCGGCGGCCGGGACGCGGAAGAATCCAAGCTGA ACCGCGCCATTCAGTCCAGGCGGCAGACCGGCTCCCTGTTCAAACCTTTCATTTACGCCACGTTTTTCCAGCAGGGCAAT TCTGCGGATACCCGCATTTCGGATGACAGGATTGCCTACGGGGAAATACGCGGAGCCGCCAACTGGTCCCCCCGCAATTC GGACGGAACGTACCGAGGCATGAAGCCGGCCTCCTTCGGCCTCATCCTTTCCCGCAACACCATGTCCGTGCGCATCGGCA ACCGCGCCGGTTTGTCCAATGTCATTCAATCCGCACAACTGGCGGGCTTCCACGGAAATATTTCCCGCACCCCGGCCCTT TATCTGGGCACGTGGGAGGCGTCCCCTCTGGACATTGCCAGCGCCTACAGCGTTTTTGCCAACGGGGGCGTACGCCCCAC ACCGTACATCATTGACCATATTACGGATTCCCAGGGCCAGCCGCGCTTCGCCATCACCAAGAGCAAGCGCACCGTCTATT CCCAGCGGGCGGCGAACATTACCTCTTCCATCCTCCAGCAGGTCTGCAAGCCCGGAGGCACGGCAGGCAAAATTACCACG CTGGGCTTTAAATCCCCCTGCGGCGGCAAAACTGGAACCACGAATAATTATACGAACGCATGGTTCGCCGGATATACGTC CAACCTCACCTGCAGTGTCTGGGTGGGGTTTGATTCCTCCACCAAAATTCTGGAAAAAGGCTACGGAGGCACCCTGGCCC TGCCCGTCTGGGTGGACATTATGCTTGCCGCCCAGAAGGAAGGCTATCCCGCCAACGCCATCCGTACGCGTCCCGGTTCG GAAGGGCAGGCCGTACTCGTCTGCCGGGAATCCAATCAACTGGCCCATTCCGGCTGCCAGTACGCCAAGACTGCGTATTT TGAAACCTCCGCAGGCTACCAGGCCCCCGCCAACATGTGTGAACAGCACATTCCCATGGCGGAACCGGATTCGGAAGAGA GCATTCCCTATGCGGAACCGCTGGACGGCAGCGACGATAACATCCCCCTGGCCGAACCCGTGGAAGAAACGGACGGCATC CCCTACGCCACCCCCATCTGA
Upstream 100 bases:
>100_bases AAACGTTCAAAACGGCAGAATTTTGTCTATGGATTGCGACATGGCGCCCCATCTTTTGCTTAGACCATTTCGGTTATTTA TGATAAACTCCGGCCCACGG
Downstream 100 bases:
>100_bases TTGCTTATTTTTTCCTTATGATTTCCCCATTTTTTCCCTGGTTCCTGGCCTTTTTGCTGCTGATCGCCTGCGTGGCGCTG CTGGTTCTGCTGCTGCGGTA
Product: Peptidoglycan glycosyltransferase
Products: NA
Alternate protein names: PBP-1a; PBP1a; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 886; Mature: 885
Protein sequence:
>886_residues MGLNDKSRKRNAASWRERIQDGEMSSRSQTERKKRPLPRPSYPGLPQEAPDPAVIPGPTRRTGNSRNGPSRYDTPPQRRT SRPSPKEEYEGNPEREEENRPARAGTMRRPRFTIFGALLFVLLMPFRFIGSLTRNIRWFICWPLRILLGCCFVGIVIGAI LVFLYGTISNRYDISEVKSNIPERTVILDRKNRTIGTLHGENRKRVSLQEVPPVFIDALLLREDNRFYDHGGVDWIGVGR AFAQVLKHKRATQGASTLTMQLAKITYNHRERNLHSKLTEVALAKRIEATYTKDEILETYINRIFWGHTFLGIAAAARGY YDKEPRDLSLAECATLAGIIYGPNDFSPIKHPEEAKKVRDIVLGLLKNEGKITEVQYQAALAEPIVTRTPQSRSEENYAM GLVRRELDAILEEEDIRLGGLVVHTTLDLDLQNATLDAINKHMDALEARKDFKKHLASLQAKREKRGILKNKLTTKAEYE ASLAAWKALPAEQKEKTQPPMPNYIQSAAVVMDNATGALLAVVGGRDAEESKLNRAIQSRRQTGSLFKPFIYATFFQQGN SADTRISDDRIAYGEIRGAANWSPRNSDGTYRGMKPASFGLILSRNTMSVRIGNRAGLSNVIQSAQLAGFHGNISRTPAL YLGTWEASPLDIASAYSVFANGGVRPTPYIIDHITDSQGQPRFAITKSKRTVYSQRAANITSSILQQVCKPGGTAGKITT LGFKSPCGGKTGTTNNYTNAWFAGYTSNLTCSVWVGFDSSTKILEKGYGGTLALPVWVDIMLAAQKEGYPANAIRTRPGS EGQAVLVCRESNQLAHSGCQYAKTAYFETSAGYQAPANMCEQHIPMAEPDSEESIPYAEPLDGSDDNIPLAEPVEETDGI PYATPI
Sequences:
>Translated_886_residues MGLNDKSRKRNAASWRERIQDGEMSSRSQTERKKRPLPRPSYPGLPQEAPDPAVIPGPTRRTGNSRNGPSRYDTPPQRRT SRPSPKEEYEGNPEREEENRPARAGTMRRPRFTIFGALLFVLLMPFRFIGSLTRNIRWFICWPLRILLGCCFVGIVIGAI LVFLYGTISNRYDISEVKSNIPERTVILDRKNRTIGTLHGENRKRVSLQEVPPVFIDALLLREDNRFYDHGGVDWIGVGR AFAQVLKHKRATQGASTLTMQLAKITYNHRERNLHSKLTEVALAKRIEATYTKDEILETYINRIFWGHTFLGIAAAARGY YDKEPRDLSLAECATLAGIIYGPNDFSPIKHPEEAKKVRDIVLGLLKNEGKITEVQYQAALAEPIVTRTPQSRSEENYAM GLVRRELDAILEEEDIRLGGLVVHTTLDLDLQNATLDAINKHMDALEARKDFKKHLASLQAKREKRGILKNKLTTKAEYE ASLAAWKALPAEQKEKTQPPMPNYIQSAAVVMDNATGALLAVVGGRDAEESKLNRAIQSRRQTGSLFKPFIYATFFQQGN SADTRISDDRIAYGEIRGAANWSPRNSDGTYRGMKPASFGLILSRNTMSVRIGNRAGLSNVIQSAQLAGFHGNISRTPAL YLGTWEASPLDIASAYSVFANGGVRPTPYIIDHITDSQGQPRFAITKSKRTVYSQRAANITSSILQQVCKPGGTAGKITT LGFKSPCGGKTGTTNNYTNAWFAGYTSNLTCSVWVGFDSSTKILEKGYGGTLALPVWVDIMLAAQKEGYPANAIRTRPGS EGQAVLVCRESNQLAHSGCQYAKTAYFETSAGYQAPANMCEQHIPMAEPDSEESIPYAEPLDGSDDNIPLAEPVEETDGI PYATPI >Mature_885_residues GLNDKSRKRNAASWRERIQDGEMSSRSQTERKKRPLPRPSYPGLPQEAPDPAVIPGPTRRTGNSRNGPSRYDTPPQRRTS RPSPKEEYEGNPEREEENRPARAGTMRRPRFTIFGALLFVLLMPFRFIGSLTRNIRWFICWPLRILLGCCFVGIVIGAIL VFLYGTISNRYDISEVKSNIPERTVILDRKNRTIGTLHGENRKRVSLQEVPPVFIDALLLREDNRFYDHGGVDWIGVGRA FAQVLKHKRATQGASTLTMQLAKITYNHRERNLHSKLTEVALAKRIEATYTKDEILETYINRIFWGHTFLGIAAAARGYY DKEPRDLSLAECATLAGIIYGPNDFSPIKHPEEAKKVRDIVLGLLKNEGKITEVQYQAALAEPIVTRTPQSRSEENYAMG LVRRELDAILEEEDIRLGGLVVHTTLDLDLQNATLDAINKHMDALEARKDFKKHLASLQAKREKRGILKNKLTTKAEYEA SLAAWKALPAEQKEKTQPPMPNYIQSAAVVMDNATGALLAVVGGRDAEESKLNRAIQSRRQTGSLFKPFIYATFFQQGNS ADTRISDDRIAYGEIRGAANWSPRNSDGTYRGMKPASFGLILSRNTMSVRIGNRAGLSNVIQSAQLAGFHGNISRTPALY LGTWEASPLDIASAYSVFANGGVRPTPYIIDHITDSQGQPRFAITKSKRTVYSQRAANITSSILQQVCKPGGTAGKITTL GFKSPCGGKTGTTNNYTNAWFAGYTSNLTCSVWVGFDSSTKILEKGYGGTLALPVWVDIMLAAQKEGYPANAIRTRPGSE GQAVLVCRESNQLAHSGCQYAKTAYFETSAGYQAPANMCEQHIPMAEPDSEESIPYAEPLDGSDDNIPLAEPVEETDGIP YATPI
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG0744
COG function: function code M; Membrane carboxypeptidase (penicillin-binding protein)
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786343, Length=597, Percent_Identity=30.4857621440536, Blast_Score=204, Evalue=3e-53, Organism=Escherichia coli, GI87082258, Length=326, Percent_Identity=32.8220858895706, Blast_Score=155, Evalue=9e-39, Organism=Escherichia coli, GI1788867, Length=237, Percent_Identity=30.8016877637131, Blast_Score=111, Evalue=2e-25, Organism=Escherichia coli, GI1789601, Length=171, Percent_Identity=29.8245614035088, Blast_Score=74, Evalue=5e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.1.129; 3.4.-.- [C]
Molecular weight: Translated: 98235; Mature: 98103
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLNDKSRKRNAASWRERIQDGEMSSRSQTERKKRPLPRPSYPGLPQEAPDPAVIPGPTR CCCCCCHHHCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC RTGNSRNGPSRYDTPPQRRTSRPSPKEEYEGNPEREEENRPARAGTMRRPRFTIFGALLF CCCCCCCCCCCCCCCCHHCCCCCCCHHHCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHH VLLMPFRFIGSLTRNIRWFICWPLRILLGCCFVGIVIGAILVFLYGTISNRYDISEVKSN HHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHC IPERTVILDRKNRTIGTLHGENRKRVSLQEVPPVFIDALLLREDNRFYDHGGVDWIGVGR CCCEEEEEECCCCEEEEEECCCCCEEEHHHCCHHHHHHHHHHCCCCEECCCCCCEEHHHH AFAQVLKHKRATQGASTLTMQLAKITYNHRERNLHSKLTEVALAKRIEATYTKDEILETY HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH INRIFWGHTFLGIAAAARGYYDKEPRDLSLAECATLAGIIYGPNDFSPIKHPEEAKKVRD HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHEEECCCCCCCCCCCHHHHHHHH IVLGLLKNEGKITEVQYQAALAEPIVTRTPQSRSEENYAMGLVRRELDAILEEEDIRLGG HHHHHHHCCCCEEEHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEECC LVVHTTLDLDLQNATLDAINKHMDALEARKDFKKHLASLQAKREKRGILKNKLTTKAEYE EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH ASLAAWKALPAEQKEKTQPPMPNYIQSAAVVMDNATGALLAVVGGRDAEESKLNRAIQSR HHHHHHHCCCCCHHHCCCCCCCHHHHHHHHEEECCCCEEEEEECCCCCHHHHHHHHHHHH RQTGSLFKPFIYATFFQQGNSADTRISDDRIAYGEIRGAANWSPRNSDGTYRGMKPASFG HHCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHCCCCCCCCCCCCCCCCCCCCCCCCE LILSRNTMSVRIGNRAGLSNVIQSAQLAGFHGNISRTPALYLGTWEASPLDIASAYSVFA EEEECCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHH NGGVRPTPYIIDHITDSQGQPRFAITKSKRTVYSQRAANITSSILQQVCKPGGTAGKITT CCCCCCCCEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE LGFKSPCGGKTGTTNNYTNAWFAGYTSNLTCSVWVGFDSSTKILEKGYGGTLALPVWVDI ECCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCHHHHHCCCCCEEEHHHHHHH MLAAQKEGYPANAIRTRPGSEGQAVLVCRESNQLAHSGCQYAKTAYFETSAGYQAPANMC HHHHHCCCCCCCCEECCCCCCCCEEEEECCCCHHHHHCHHHHHHHEEECCCCCCCHHHHH EQHIPMAEPDSEESIPYAEPLDGSDDNIPLAEPVEETDGIPYATPI HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCC >Mature Secondary Structure GLNDKSRKRNAASWRERIQDGEMSSRSQTERKKRPLPRPSYPGLPQEAPDPAVIPGPTR CCCCCHHHCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC RTGNSRNGPSRYDTPPQRRTSRPSPKEEYEGNPEREEENRPARAGTMRRPRFTIFGALLF CCCCCCCCCCCCCCCCHHCCCCCCCHHHCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHH VLLMPFRFIGSLTRNIRWFICWPLRILLGCCFVGIVIGAILVFLYGTISNRYDISEVKSN HHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHC IPERTVILDRKNRTIGTLHGENRKRVSLQEVPPVFIDALLLREDNRFYDHGGVDWIGVGR CCCEEEEEECCCCEEEEEECCCCCEEEHHHCCHHHHHHHHHHCCCCEECCCCCCEEHHHH AFAQVLKHKRATQGASTLTMQLAKITYNHRERNLHSKLTEVALAKRIEATYTKDEILETY HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH INRIFWGHTFLGIAAAARGYYDKEPRDLSLAECATLAGIIYGPNDFSPIKHPEEAKKVRD HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHEEECCCCCCCCCCCHHHHHHHH IVLGLLKNEGKITEVQYQAALAEPIVTRTPQSRSEENYAMGLVRRELDAILEEEDIRLGG HHHHHHHCCCCEEEHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEECC LVVHTTLDLDLQNATLDAINKHMDALEARKDFKKHLASLQAKREKRGILKNKLTTKAEYE EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH ASLAAWKALPAEQKEKTQPPMPNYIQSAAVVMDNATGALLAVVGGRDAEESKLNRAIQSR HHHHHHHCCCCCHHHCCCCCCCHHHHHHHHEEECCCCEEEEEECCCCCHHHHHHHHHHHH RQTGSLFKPFIYATFFQQGNSADTRISDDRIAYGEIRGAANWSPRNSDGTYRGMKPASFG HHCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHCCCCCCCCCCCCCCCCCCCCCCCCE LILSRNTMSVRIGNRAGLSNVIQSAQLAGFHGNISRTPALYLGTWEASPLDIASAYSVFA EEEECCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHH NGGVRPTPYIIDHITDSQGQPRFAITKSKRTVYSQRAANITSSILQQVCKPGGTAGKITT CCCCCCCCEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE LGFKSPCGGKTGTTNNYTNAWFAGYTSNLTCSVWVGFDSSTKILEKGYGGTLALPVWVDI ECCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCHHHHHCCCCCEEEHHHHHHH MLAAQKEGYPANAIRTRPGSEGQAVLVCRESNQLAHSGCQYAKTAYFETSAGYQAPANMC HHHHHCCCCCCCCEECCCCCCCCEEEEECCCCHHHHHCHHHHHHHEEECCCCCCCHHHHH EQHIPMAEPDSEESIPYAEPLDGSDDNIPLAEPVEETDGIPYATPI HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10984043; 7901733 [H]