| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is 187734637
Identifier: 187734637
GI number: 187734637
Start: 153200
End: 154495
Strand: Reverse
Name: 187734637
Synonym: Amuc_0124
Alternate gene names: NA
Gene position: 154495-153200 (Counterclockwise)
Preceding gene: 187734639
Following gene: 187734632
Centisome position: 5.8
GC content: 53.78
Gene sequence:
>1296_bases ATGAATATTCCTGTTACCTTGATTTTGCTTGCTTTCCACATGGCTGCGGCGGCTTCCGCATCCATCTGTGCTTCCCGGAA AACAGAGTGGGCGGATTGGAATTATTTAACTTCTTACGGTCAATCCCTTTCTGTGGGCTGGACGGCTAAGCCCGTTGTAA CGGAAAAGCAGGAGGAAGGGGGCTTGTATATGTTCAGGGGAGGGGTGAGAGCGTATGAGAACGGCAGTGACCGCAAGATG CTGGTTCCTCTGGAGGAAGGAGTGAACGGTCCGCGCGGCGAAACTCCCGTATCCGGGGCTGCCTGTCGTTTGTTCCGCCT GATGCAGCATTATTCTCCCGTTACGGCTTCCCGTATCCGGTTGATTTGTTCTGCGACGGGAGTGGGTGGGGCGAGCCTTG GTTCCCTGGGCAGGGGAACTGGAGCCTACAACCGCATTTTGGATGATTTGAAGGCCGCCAAAATACTGGCTGACCGGGAA GGGAAGACCCTTTCCATGCCTGCGTTTATCTGGACCCAGGGAGAGACGGATCACCAGGACAGAAAGACGAGGGAATGGTA CCGGGAAAAAATGGAAAAGCTGATCAGGGACATAAATCATGACGCCAGGGCCGTGACCGGGCAGAAAAACGATGTGGTCT GTTTCGGCTATCAGGTTGGTTCCCATTTGAATTATTATCAGTTTAATCCTACGGATTATCCGGCTATTGCCCTGGAACAG CTGGAGATGGCTTTGGAGAAGGACAGCCGGTATGTGATGACGACCCCGATGTATCATTTCGAGTATAGCGACGGAGTCCA TTTGACGGCGCCCATGTCCCGCCTTTATGGGGAGTATGTGGGCTATGTCATGAAGAAAGTCCTGTTGGATGGGGCGGACT GGAAACCCGTGCATCCCCTGACCCATAAAATCAGGAAGTCCGGAAAGGGTTGGACGGTGGAAGTGGCATTTTATGCTCCC TGCCCCCCTTTGGTTCTGGACACGAAGACGGTTGACGATCCTGGCAATTATGGTTTTTCCCTTGTGGGGGCTGAGGGAGA GGATATTGCCATCAAGTCTGTCCGGCTGGTGGGGAAGAATGCGGTACAGCTGTTGACGGAGAAGGACCCGGGGAAAGGGC GTCTACGCTATGGGATGACGATTAATGAGCACCGTCTTTCCGGTCCGCGGACGGGGGCGCGGGGCTGTCTGAGGGATTCC CAGGGAGATGAGGTTAAGGCCCATATCCAGGGCAAAGATTACCGAATGGATAATTGGTGCCCCTTTTTTGATTACTCCCT GTCAAAAGGGCATTGA
Upstream 100 bases:
>100_bases ATGGTACTGCAGCAATGGATGGACAGCTTTGTGTTCAGGAATTGATAAAAAGAGGGAACGGCTAACGTATGTTCACGGAC AGAGTCCGTTGAATTATCTG
Downstream 100 bases:
>100_bases TTTTCCGGAAATGGCTGCATGATCTTTTTTTGCCGCAGGTTGTTCCCCCCCTCTGCAAACGGAAAAGGATACCCGGGCGG CTTGAAAAAAACAGGAAAGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 431; Mature: 431
Protein sequence:
>431_residues MNIPVTLILLAFHMAAAASASICASRKTEWADWNYLTSYGQSLSVGWTAKPVVTEKQEEGGLYMFRGGVRAYENGSDRKM LVPLEEGVNGPRGETPVSGAACRLFRLMQHYSPVTASRIRLICSATGVGGASLGSLGRGTGAYNRILDDLKAAKILADRE GKTLSMPAFIWTQGETDHQDRKTREWYREKMEKLIRDINHDARAVTGQKNDVVCFGYQVGSHLNYYQFNPTDYPAIALEQ LEMALEKDSRYVMTTPMYHFEYSDGVHLTAPMSRLYGEYVGYVMKKVLLDGADWKPVHPLTHKIRKSGKGWTVEVAFYAP CPPLVLDTKTVDDPGNYGFSLVGAEGEDIAIKSVRLVGKNAVQLLTEKDPGKGRLRYGMTINEHRLSGPRTGARGCLRDS QGDEVKAHIQGKDYRMDNWCPFFDYSLSKGH
Sequences:
>Translated_431_residues MNIPVTLILLAFHMAAAASASICASRKTEWADWNYLTSYGQSLSVGWTAKPVVTEKQEEGGLYMFRGGVRAYENGSDRKM LVPLEEGVNGPRGETPVSGAACRLFRLMQHYSPVTASRIRLICSATGVGGASLGSLGRGTGAYNRILDDLKAAKILADRE GKTLSMPAFIWTQGETDHQDRKTREWYREKMEKLIRDINHDARAVTGQKNDVVCFGYQVGSHLNYYQFNPTDYPAIALEQ LEMALEKDSRYVMTTPMYHFEYSDGVHLTAPMSRLYGEYVGYVMKKVLLDGADWKPVHPLTHKIRKSGKGWTVEVAFYAP CPPLVLDTKTVDDPGNYGFSLVGAEGEDIAIKSVRLVGKNAVQLLTEKDPGKGRLRYGMTINEHRLSGPRTGARGCLRDS QGDEVKAHIQGKDYRMDNWCPFFDYSLSKGH >Mature_431_residues MNIPVTLILLAFHMAAAASASICASRKTEWADWNYLTSYGQSLSVGWTAKPVVTEKQEEGGLYMFRGGVRAYENGSDRKM LVPLEEGVNGPRGETPVSGAACRLFRLMQHYSPVTASRIRLICSATGVGGASLGSLGRGTGAYNRILDDLKAAKILADRE GKTLSMPAFIWTQGETDHQDRKTREWYREKMEKLIRDINHDARAVTGQKNDVVCFGYQVGSHLNYYQFNPTDYPAIALEQ LEMALEKDSRYVMTTPMYHFEYSDGVHLTAPMSRLYGEYVGYVMKKVLLDGADWKPVHPLTHKIRKSGKGWTVEVAFYAP CPPLVLDTKTVDDPGNYGFSLVGAEGEDIAIKSVRLVGKNAVQLLTEKDPGKGRLRYGMTINEHRLSGPRTGARGCLRDS QGDEVKAHIQGKDYRMDNWCPFFDYSLSKGH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48013; Mature: 48013
Theoretical pI: Translated: 8.58; Mature: 8.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIPVTLILLAFHMAAAASASICASRKTEWADWNYLTSYGQSLSVGWTAKPVVTEKQEEG CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCEEECCCCCCCCCCCCCCCC GLYMFRGGVRAYENGSDRKMLVPLEEGVNGPRGETPVSGAACRLFRLMQHYSPVTASRIR CEEEEECCCEEECCCCCCEEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHEE LICSATGVGGASLGSLGRGTGAYNRILDDLKAAKILADREGKTLSMPAFIWTQGETDHQD EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCEEEEECCCCCCHH RKTREWYREKMEKLIRDINHDARAVTGQKNDVVCFGYQVGSHLNYYQFNPTDYPAIALEQ HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEEEECCCCCEEEECCCCCCHHHHHH LEMALEKDSRYVMTTPMYHFEYSDGVHLTAPMSRLYGEYVGYVMKKVLLDGADWKPVHPL HHHHHHCCCCEEEECCEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH THKIRKSGKGWTVEVAFYAPCPPLVLDTKTVDDPGNYGFSLVGAEGEDIAIKSVRLVGKN HHHHHHCCCCEEEEEEEECCCCCEEEECCCCCCCCCCCEEEECCCCCCEEEEEEEECCCC AVQLLTEKDPGKGRLRYGMTINEHRLSGPRTGARGCLRDSQGDEVKAHIQGKDYRMDNWC HHHEEECCCCCCCEEEECCEECCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCEECCCCC PFFDYSLSKGH CCCCCCCCCCC >Mature Secondary Structure MNIPVTLILLAFHMAAAASASICASRKTEWADWNYLTSYGQSLSVGWTAKPVVTEKQEEG CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCEEECCCCCCCCCCCCCCCC GLYMFRGGVRAYENGSDRKMLVPLEEGVNGPRGETPVSGAACRLFRLMQHYSPVTASRIR CEEEEECCCEEECCCCCCEEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHEE LICSATGVGGASLGSLGRGTGAYNRILDDLKAAKILADREGKTLSMPAFIWTQGETDHQD EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCEEEEECCCCCCHH RKTREWYREKMEKLIRDINHDARAVTGQKNDVVCFGYQVGSHLNYYQFNPTDYPAIALEQ HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEEEECCCCCEEEECCCCCCHHHHHH LEMALEKDSRYVMTTPMYHFEYSDGVHLTAPMSRLYGEYVGYVMKKVLLDGADWKPVHPL HHHHHHCCCCEEEECCEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH THKIRKSGKGWTVEVAFYAPCPPLVLDTKTVDDPGNYGFSLVGAEGEDIAIKSVRLVGKN HHHHHHCCCCEEEEEEEECCCCCEEEECCCCCCCCCCCEEEECCCCCCEEEEEEEECCCC AVQLLTEKDPGKGRLRYGMTINEHRLSGPRTGARGCLRDSQGDEVKAHIQGKDYRMDNWC HHHEEECCCCCCCEEEECCEECCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCEECCCCC PFFDYSLSKGH CCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA