| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is 187734520
Identifier: 187734520
GI number: 187734520
Start: 4429
End: 5211
Strand: Direct
Name: 187734520
Synonym: Amuc_0004
Alternate gene names: NA
Gene position: 4429-5211 (Clockwise)
Preceding gene: 187734519
Following gene: 187734521
Centisome position: 0.17
GC content: 56.07
Gene sequence:
>783_bases ATGTCTCCAGTACTTACCATTTTCAGAAAAGAACTCAGAAGCTACGTAATGACTCCGTACGGATGGGTTATCCTGGCTTT CGTCATGGCCCTTCAGAGCGTCTCCCTGTCCGGCACGCTGAAGGCTTTTCAACTGGCCCCGCAGAAGGAAGGCATCCTGT TCTTCATCCTGCATTCTCCCATGTTCTGGTTTTACTTCCTGTTCATCTTCCCTCTGCTCACCATGCGTTCCCTGGCGGAG GAGGAAAAGACGGGAACACTGGAATCCCTGCTCACCACGCCCATCAAGACATGGCAGGTGGTTCTGGGAAAATACTTCTC CGCATACGCCTTTTACATCATCCTGTGGCTGCCCATGCTTCTCTATCCCATCCTGGCGGACTGGTCCAACCTGATTGTGC AGTGGATTTACGGATATGACGCGGGCATGGTTCTGCCTTACCGCCTGGCGGACTGGGCCGGGGCATACGCCATTCTGCTG CTGGTCGGCGCCTGGTTCACGGCCATCGGCATTTTCGCCTCCTCCATGACGGGCAGCCAGATTATTTCCGGCATCATCAC CATCGGCCTGCTGGTCCTGATTTTCTTCATGGGTCTGATTCCCGTGGTGTGGGGGGAATTCCCCGCAGCGGGGATTTTCC ACTACATGTCCTGCTCGGAACATCTGGACCGCTTTTCCGCCGGGCTGGTTGACACGCGCCCCGTCGTGTTTTACCTGACC ATGACAGTCCTGACGCTGGCCGTCACCATCCGCATCATTGACCACCGCCGCTGGAAACACTGA
Upstream 100 bases:
>100_bases CCCACGCTGGAAGAAGTGTTCGTGGAAATGACCCGTAAAGATTAACCCCCCCTTTTTCCATCCCCGCCTATCCACCACCG CCCATTTCCCTTTTCTCCCC
Downstream 100 bases:
>100_bases CTCATCCCTCCTTCACCACTTTTCATTTTTATCTATGAGCGAAACACCAGACACCCCCGCCGCGGCCGCAGAAGCCTCCC AGCCCGCCGCCCGCAAGGTC
Product: hypothetical protein
Products: NA
Alternate protein names: ABC Transporter Permease Protein; Gliding Motility Protein GldF; ABC Transporter Permease; Protein Involved In Gliding Motility Gldf; Abc Transporter Permease Protein; ABC-Type Transport System Membrane Protein; Permease Of ABC Transporter; ABC-2 Type Transport System Permease Protein; ABC-Type Transport System; ABC-2 Type Transporter Superfamily; ABC-2 Type Transporter Superfamily Protein; ABC-Type Transport System Permease Protein; Cytochrome C-Type Biogenesis Protein CcmB; Protein Involved In Gliding Motility GldF
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MSPVLTIFRKELRSYVMTPYGWVILAFVMALQSVSLSGTLKAFQLAPQKEGILFFILHSPMFWFYFLFIFPLLTMRSLAE EEKTGTLESLLTTPIKTWQVVLGKYFSAYAFYIILWLPMLLYPILADWSNLIVQWIYGYDAGMVLPYRLADWAGAYAILL LVGAWFTAIGIFASSMTGSQIISGIITIGLLVLIFFMGLIPVVWGEFPAAGIFHYMSCSEHLDRFSAGLVDTRPVVFYLT MTVLTLAVTIRIIDHRRWKH
Sequences:
>Translated_260_residues MSPVLTIFRKELRSYVMTPYGWVILAFVMALQSVSLSGTLKAFQLAPQKEGILFFILHSPMFWFYFLFIFPLLTMRSLAE EEKTGTLESLLTTPIKTWQVVLGKYFSAYAFYIILWLPMLLYPILADWSNLIVQWIYGYDAGMVLPYRLADWAGAYAILL LVGAWFTAIGIFASSMTGSQIISGIITIGLLVLIFFMGLIPVVWGEFPAAGIFHYMSCSEHLDRFSAGLVDTRPVVFYLT MTVLTLAVTIRIIDHRRWKH >Mature_259_residues SPVLTIFRKELRSYVMTPYGWVILAFVMALQSVSLSGTLKAFQLAPQKEGILFFILHSPMFWFYFLFIFPLLTMRSLAEE EKTGTLESLLTTPIKTWQVVLGKYFSAYAFYIILWLPMLLYPILADWSNLIVQWIYGYDAGMVLPYRLADWAGAYAILLL VGAWFTAIGIFASSMTGSQIISGIITIGLLVLIFFMGLIPVVWGEFPAAGIFHYMSCSEHLDRFSAGLVDTRPVVFYLTM TVLTLAVTIRIIDHRRWKH
Specific function: Unknown
COG id: COG1277
COG function: function code R; ABC-type transport system involved in multi-copper enzyme maturation, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29643; Mature: 29512
Theoretical pI: Translated: 8.82; Mature: 8.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPVLTIFRKELRSYVMTPYGWVILAFVMALQSVSLSGTLKAFQLAPQKEGILFFILHSP CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEEHHHH MFWFYFLFIFPLLTMRSLAEEEKTGTLESLLTTPIKTWQVVLGKYFSAYAFYIILWLPML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LYPILADWSNLIVQWIYGYDAGMVLPYRLADWAGAYAILLLVGAWFTAIGIFASSMTGSQ HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH IISGIITIGLLVLIFFMGLIPVVWGEFPAAGIFHYMSCSEHLDRFSAGLVDTRPVVFYLT HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH MTVLTLAVTIRIIDHRRWKH HHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SPVLTIFRKELRSYVMTPYGWVILAFVMALQSVSLSGTLKAFQLAPQKEGILFFILHSP CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEEHHHH MFWFYFLFIFPLLTMRSLAEEEKTGTLESLLTTPIKTWQVVLGKYFSAYAFYIILWLPML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LYPILADWSNLIVQWIYGYDAGMVLPYRLADWAGAYAILLLVGAWFTAIGIFASSMTGSQ HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH IISGIITIGLLVLIFFMGLIPVVWGEFPAAGIFHYMSCSEHLDRFSAGLVDTRPVVFYLT HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH MTVLTLAVTIRIIDHRRWKH HHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA