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The map label for this gene is nohA [H]

Identifier: 187734043

GI number: 187734043

Start: 1326710

End: 1327258

Strand: Direct

Name: nohA [H]

Synonym: SbBS512_E1453

Alternate gene names: 187734043

Gene position: 1326710-1327258 (Clockwise)

Preceding gene: 187730743

Following gene: 187730353

Centisome position: 28.74

GC content: 50.09

Gene sequence:

>549_bases
ATGAAGGTTAATAAAAAGAGGCTTGCCGAAATTTTTAACGTGGACCCGCGGACGATTGAACGCTGGCAGTCTCAGGGGCT
CCCTTGCGTCTCCAAAGGCAGTAAGGGCATTGAATCTGTATTTGATACTGCCATGGCAATTCAGTGGTATGCGCAGAGGG
AAACTGATATCGAAAACGAAAAGCTCCGCAAAGAACTGGCCGATTTGCGTGCGGCAGCGGAGTCAGATTTACAACCCGGC
ACCATTGACTATGAACGCTACCGGCTCACAAAAGCGCAGGCAGATGCGCAGGAACTGAAAAATGCCCGTGAAGACGGAGT
GGTGCTGGAAACTGAACTGTTTACCTTCATTCTGCAACGTGTGGCACAGGAGATTTCGGGGATACTTGTGCGTGTGCCGT
TGACATTACAGCGTAAATATCCGGACATTTCACCATCACACCTTGATGTGGTGAAAACTGAAATCGCGAAAGCCTCCAAT
GTTGCAGCTAAGGCCGGTGAAAACGTGGGCGGGTGGATCGATGATTTCAGACGCACAGAAGGCAGCTAA

Upstream 100 bases:

>100_bases
TTTTAATATTGCATTCATAAATGTCCGACATGAAAGTGTCCGAAAATGCCTTTTTCTGGCGTTTTCATGTCGGGCCTTGT
ATTTGATAATGGGTTGTTCT

Downstream 100 bases:

>100_bases
TGCAGCCGGTGCGATAGCTACAGGGCTTTTATCTCTCATTATTCCTGTTCCACTGACGACAGTTCAGTGGGCCAATAAAC
ATTATTACCTTCCTAAAGAG

Product: terminase small subunit (Gp1)

Products: NA

Alternate protein names: Gp1 [H]

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MKVNKKRLAEIFNVDPRTIERWQSQGLPCVSKGSKGIESVFDTAMAIQWYAQRETDIENEKLRKELADLRAAAESDLQPG
TIDYERYRLTKAQADAQELKNAREDGVVLETELFTFILQRVAQEISGILVRVPLTLQRKYPDISPSHLDVVKTEIAKASN
VAAKAGENVGGWIDDFRRTEGS

Sequences:

>Translated_182_residues
MKVNKKRLAEIFNVDPRTIERWQSQGLPCVSKGSKGIESVFDTAMAIQWYAQRETDIENEKLRKELADLRAAAESDLQPG
TIDYERYRLTKAQADAQELKNAREDGVVLETELFTFILQRVAQEISGILVRVPLTLQRKYPDISPSHLDVVKTEIAKASN
VAAKAGENVGGWIDDFRRTEGS
>Mature_182_residues
MKVNKKRLAEIFNVDPRTIERWQSQGLPCVSKGSKGIESVFDTAMAIQWYAQRETDIENEKLRKELADLRAAAESDLQPG
TIDYERYRLTKAQADAQELKNAREDGVVLETELFTFILQRVAQEISGILVRVPLTLQRKYPDISPSHLDVVKTEIAKASN
VAAKAGENVGGWIDDFRRTEGS

Specific function: Involved in the initiation of the phage DNA packaging into the prohead. Processes replicating concatemeric DNA into pieces of unit length with cohesive ends [H]

COG id: COG4220

COG function: function code L; Phage DNA packaging protein, Nu1 subunit of terminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the terminase small subunit family [H]

Homologues:

Organism=Escherichia coli, GI1786773, Length=181, Percent_Identity=51.3812154696133, Blast_Score=197, Evalue=3e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR010906
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07471 Phage_Nu1 [H]

EC number: NA

Molecular weight: Translated: 20521; Mature: 20521

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVNKKRLAEIFNVDPRTIERWQSQGLPCVSKGSKGIESVFDTAMAIQWYAQRETDIENE
CCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
KLRKELADLRAAAESDLQPGTIDYERYRLTKAQADAQELKNAREDGVVLETELFTFILQR
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHH
VAQEISGILVRVPLTLQRKYPDISPSHLDVVKTEIAKASNVAAKAGENVGGWIDDFRRTE
HHHHHHHEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
GS
CC
>Mature Secondary Structure
MKVNKKRLAEIFNVDPRTIERWQSQGLPCVSKGSKGIESVFDTAMAIQWYAQRETDIENE
CCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
KLRKELADLRAAAESDLQPGTIDYERYRLTKAQADAQELKNAREDGVVLETELFTFILQR
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHH
VAQEISGILVRVPLTLQRKYPDISPSHLDVVKTEIAKASNVAAKAGENVGGWIDDFRRTE
HHHHHHHEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
GS
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]