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The map label for this gene is ycbQ [H]

Identifier: 187733887

GI number: 187733887

Start: 2170893

End: 2171435

Strand: Reverse

Name: ycbQ [H]

Synonym: SbBS512_E2380

Alternate gene names: 187733887

Gene position: 2171435-2170893 (Counterclockwise)

Preceding gene: 187732697

Following gene: 187731051

Centisome position: 47.04

GC content: 43.46

Gene sequence:

>543_bases
ATGAAAAAAAGTGTATTGACGGCGTTTATAACTGTGGTATGTGCAACGTCCAGCGTTATGGCAGCTGATGATAATGCTAT
CACGGATGGCAAAGTAACATTTAATGGTAAAGTTATTGCTCCAGCTTGTACCCTGGTAGCTGCGACGAAAGATTCAGTAG
TCACATTGCCAAATGTCAGCGCCACCAAGTTGCAAACTAATGGAGCAGTCTCTGGCGTTAAAACTGATGTACCAATTGCC
TTAGAAGGCTGTGATGTTACTGTAACTAAAAATGCGACGTTTACCTTTAGTGGTACGGCTGACGGCGTGCAACCTACAGC
ATTTGCCAACCAGGCTACCACCGATGCAGCGACGAATGTTGCTCTACAAATGTATCTGCCAGATGGTTCTACATCGGTAA
CTCCCGGTACCGAAACGTCGAATATTCAGTTAGCGGATTCTGCTGAGCAAACAGTGACCTTTAAAGTTGATTATATCGCT
ACGGGGAAAGCGACTTCTGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAA

Upstream 100 bases:

>100_bases
TTAGTATGCTTGATTTAAATGGCGGTCAATTATTGTTATTATTAAGTCTAATGTCATTTAAAGGCATTATCATATTTACG
AAGAGATCAGGATGATGACG

Downstream 100 bases:

>100_bases
TAGAACTCATTAATTGTTTTATTAATTAGTACCCCTCTAGTCTTCTGGAGGGGATATTCATATTTTTTAAGAGTGACTAT
TTATGAAAACTTGCATAACA

Product: fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MKKSVLTAFITVVCATSSVMAADDNAITDGKVTFNGKVIAPACTLVAATKDSVVTLPNVSATKLQTNGAVSGVKTDVPIA
LEGCDVTVTKNATFTFSGTADGVQPTAFANQATTDAATNVALQMYLPDGSTSVTPGTETSNIQLADSAEQTVTFKVDYIA
TGKATSGNVNAVTNFHINYY

Sequences:

>Translated_180_residues
MKKSVLTAFITVVCATSSVMAADDNAITDGKVTFNGKVIAPACTLVAATKDSVVTLPNVSATKLQTNGAVSGVKTDVPIA
LEGCDVTVTKNATFTFSGTADGVQPTAFANQATTDAATNVALQMYLPDGSTSVTPGTETSNIQLADSAEQTVTFKVDYIA
TGKATSGNVNAVTNFHINYY
>Mature_180_residues
MKKSVLTAFITVVCATSSVMAADDNAITDGKVTFNGKVIAPACTLVAATKDSVVTLPNVSATKLQTNGAVSGVKTDVPIA
LEGCDVTVTKNATFTFSGTADGVQPTAFANQATTDAATNVALQMYLPDGSTSVTPGTETSNIQLADSAEQTVTFKVDYIA
TGKATSGNVNAVTNFHINYY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI87081804, Length=180, Percent_Identity=84.4444444444444, Blast_Score=296, Evalue=6e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 18457; Mature: 18457

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSVLTAFITVVCATSSVMAADDNAITDGKVTFNGKVIAPACTLVAATKDSVVTLPNVS
CCCHHHHHHHHHHHHCCCEEECCCCCCCCCEEEECCEEECCEEEEEEECCCCEEEECCCC
ATKLQTNGAVSGVKTDVPIALEGCDVTVTKNATFTFSGTADGVQPTAFANQATTDAATNV
EEEEECCCCCCCCCCCCCEEEECCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCEE
ALQMYLPDGSTSVTPGTETSNIQLADSAEQTVTFKVDYIATGKATSGNVNAVTNFHINYY
EEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEEEEEEECCCCCCCEEEEEEEEEEEC
>Mature Secondary Structure
MKKSVLTAFITVVCATSSVMAADDNAITDGKVTFNGKVIAPACTLVAATKDSVVTLPNVS
CCCHHHHHHHHHHHHCCCEEECCCCCCCCCEEEECCEEECCEEEEEEECCCCEEEECCCC
ATKLQTNGAVSGVKTDVPIALEGCDVTVTKNATFTFSGTADGVQPTAFANQATTDAATNV
EEEEECCCCCCCCCCCCCEEEECCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCEE
ALQMYLPDGSTSVTPGTETSNIQLADSAEQTVTFKVDYIATGKATSGNVNAVTNFHINYY
EEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEEEEEEECCCCCCCEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]