| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is 187733445
Identifier: 187733445
GI number: 187733445
Start: 1314015
End: 1314680
Strand: Direct
Name: 187733445
Synonym: SbBS512_E1438
Alternate gene names: NA
Gene position: 1314015-1314680 (Clockwise)
Preceding gene: 187732250
Following gene: 187731725
Centisome position: 28.47
GC content: 48.2
Gene sequence:
>666_bases ATGACTATTGCTGATTTCAAACGGCCTAAATTGGAGCTCCCAAACGGGGCAAACAAACTACTACTGCACTCTTGCTGTGC TCCATGTTCCGGTGAAGTGATGGAGGCGCTTCAGGCCTCGGGAATCGACTACACCATCTTTTTCTACAACCCGAACATTC ATCCTCAGAAAGAGTATTTAATTCGTAAGGATGAAAATATTCGCTTTGCTGAACAACACGGCGTGCCGTTTATCGATGCT GATTACGACACCGACAACTGGTTTGAACGTGCCAAAGGAATGGAATGGGAGCCTGAGAGGGGGATCCGTTGTACCATGTG TTTTGACATGCGTTTTGAGCGGACAGCGTTGTACGCTGCTGAAAATGGTTTCAGTGTGATCAGCAGTTCACTGGGCATTT CACGCTGGAAAAATATGCAGCAGGTTAACGAGTGTGGGCGGCGAGCTGTTGCGCATTATCCGGGTATGGTGTACTGGGAT TATAACTGGCGCAAGCAGGGCGGCTCGTCCCGTATGATTGAAATCAGCAAGCGCGAAAAATTCTATCAGCAGGAATATTG TGGCTGTGTGTATTCTCTGCGCGATACCAATCTACACCGCAAATCTCAGGGACGCCCTCTTATCAAAATTGGCCAACTCC ACTACGGAAAAGAAGAGAAGGAGTGA
Upstream 100 bases:
>100_bases GCGTCAAAACCAGATATTACCAGATTTAGACATATATTCCCGATAGCCCTGCTCTGATGCTACACTCTGTGCTATTTTCA TGACCCCAATAAAAATATTT
Downstream 100 bases:
>100_bases TTTTATGGATCACCTTTCTGATTGATTTCATATTGGCGAGGTGACGTGAGTTAAGTAGAATGGCTGCGGGTGCTTGAGGC TATCTGTCTCAGGCATGAAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 221; Mature: 220
Protein sequence:
>221_residues MTIADFKRPKLELPNGANKLLLHSCCAPCSGEVMEALQASGIDYTIFFYNPNIHPQKEYLIRKDENIRFAEQHGVPFIDA DYDTDNWFERAKGMEWEPERGIRCTMCFDMRFERTALYAAENGFSVISSSLGISRWKNMQQVNECGRRAVAHYPGMVYWD YNWRKQGGSSRMIEISKREKFYQQEYCGCVYSLRDTNLHRKSQGRPLIKIGQLHYGKEEKE
Sequences:
>Translated_221_residues MTIADFKRPKLELPNGANKLLLHSCCAPCSGEVMEALQASGIDYTIFFYNPNIHPQKEYLIRKDENIRFAEQHGVPFIDA DYDTDNWFERAKGMEWEPERGIRCTMCFDMRFERTALYAAENGFSVISSSLGISRWKNMQQVNECGRRAVAHYPGMVYWD YNWRKQGGSSRMIEISKREKFYQQEYCGCVYSLRDTNLHRKSQGRPLIKIGQLHYGKEEKE >Mature_220_residues TIADFKRPKLELPNGANKLLLHSCCAPCSGEVMEALQASGIDYTIFFYNPNIHPQKEYLIRKDENIRFAEQHGVPFIDAD YDTDNWFERAKGMEWEPERGIRCTMCFDMRFERTALYAAENGFSVISSSLGISRWKNMQQVNECGRRAVAHYPGMVYWDY NWRKQGGSSRMIEISKREKFYQQEYCGCVYSLRDTNLHRKSQGRPLIKIGQLHYGKEEKE
Specific function: Unknown
COG id: COG1636
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003828 [H]
Pfam domain/function: PF02677 DUF208 [H]
EC number: NA
Molecular weight: Translated: 25866; Mature: 25734
Theoretical pI: Translated: 7.99; Mature: 7.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 7.2 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 6.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIADFKRPKLELPNGANKLLLHSCCAPCSGEVMEALQASGIDYTIFFYNPNIHPQKEYL CCCCCCCCCCEECCCCCCHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCHHHE IRKDENIRFAEQHGVPFIDADYDTDNWFERAKGMEWEPERGIRCTMCFDMRFERTALYAA EECCCCCEEHHHCCCCEEECCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEEEEC ENGFSVISSSLGISRWKNMQQVNECGRRAVAHYPGMVYWDYNWRKQGGSSRMIEISKREK CCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEHHHHH FYQQEYCGCVYSLRDTNLHRKSQGRPLIKIGQLHYGKEEKE HHHHHHHHEEEEECCCCCCHHHCCCCEEEECCEECCCCCCC >Mature Secondary Structure TIADFKRPKLELPNGANKLLLHSCCAPCSGEVMEALQASGIDYTIFFYNPNIHPQKEYL CCCCCCCCCEECCCCCCHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCHHHE IRKDENIRFAEQHGVPFIDADYDTDNWFERAKGMEWEPERGIRCTMCFDMRFERTALYAA EECCCCCEEHHHCCCCEEECCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEEEEC ENGFSVISSSLGISRWKNMQQVNECGRRAVAHYPGMVYWDYNWRKQGGSSRMIEISKREK CCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEHHHHH FYQQEYCGCVYSLRDTNLHRKSQGRPLIKIGQLHYGKEEKE HHHHHHHHEEEEECCCCCCHHHCCCCEEEECCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]