Click here to switch to the map view.

The map label for this gene is ompC

Identifier: 187733369

GI number: 187733369

Start: 683945

End: 685075

Strand: Direct

Name: ompC

Synonym: SbBS512_E0724

Alternate gene names: 187733369

Gene position: 683945-685075 (Clockwise)

Preceding gene: 187731557

Following gene: 187730105

Centisome position: 14.82

GC content: 50.04

Gene sequence:

>1131_bases
ATGAAAGTTAAAGTACTGTCCCTCCTGGTCCCAGCTCTGCTGGTAGCAGGCGCAGCAAACGCTGCTGAAGTTTACAACAA
AGACGGCAACAAATTAGATCTGTACGGTAAAGTAGACGGCCTGCACTATTTCTCTGACAACAAGTCAGAAGACGGCGACC
AGACCTATGTACGTCTTGGTTTCAAAGGCGAAACTCAGGTTACTGACCAGCTGACCGGTTACGGCCAGTGGGAATATCAG
ATCCAGGGCAATACCTCTGAAGACAACAAAGAAAACTCCTGGACCCGTGTGGCATTCGCAGGTCTGAAATTCCAGGATGT
AGGTTCTTTCGACTACGGTCGTAACTACGGCGTTGTTTACGACGTAACTTCCTGGACCGACGTACTGCCAGAATTCGGTG
GCGACACCTACGGTTCTGACAACTTCATGCAGCAGCGTGGTAACGGCTTCGCGACCTACCGTAACACCGACTTCTTCGGT
CTGGTTGACGGTCTGAACTTTGCTGTTCAGTACCAGGGCAAAAACGGTAGCGTAAGCGGCGAAGGCATGACCAACAACGG
TCGTGGCGCTCTGCGTCAGAACGGCGACGGTGTCGGCGGTTCTATCACTTATGATTACGAAGGCTTCGGTATCGGTGCTG
CAGTTTCCAGCTCCAAACGTACTGATGATCAAAATGGTAGCTACATCAGCAATGGTGTAGTTCGTAACTACATCGGTACT
GGCGACCGTGCTGAAACCTACACTGGTGGTCTGAAATACGACGCTAACAACATCTACTTGGCTGCTCAGTACACCCAGAC
CTACAACGCAACTCGCGTAGGTTCCCTGGGTTGGGCGAACAAAGCACAGAACTTCGAAGCTGTTGCTCAGTACCAGTTCG
ACTTCGGTCTGCGTCCGTCTGTAGCATACCTGCAGTCTAAAGGTAAAAACCTGGGTGTCATCAATGGTCGTAACTACGAC
GACGAAGATATCCTGAAATATGTTGATGTTGGCGCGACCTACTACTTCAACAAAAACATGTCCACCTATGTTGACTACAA
AATCAACCTGCTGGACGACAACCAGTTCACTCGTGACGCTGGCATCAACACTGATAACATCGTAGCTCTGGGTCTGGTTT
ACCAGTTCTAA

Upstream 100 bases:

>100_bases
ATTTTTGGGGAGAATGGACTTGCCGACTGATTAATGAGGGTTAATCAGTATGCAGTGGCATAAAAAAGCAAATAAAGGCA
TATAACAGAGGGTTAATAAC

Downstream 100 bases:

>100_bases
TCTCGATTGATATCGAAAAAAGGGCCTGCGGGCCCTTTTTTCATTGTTTTCAGCGTACAAACTCAGTTTTTTGGTGTACT
CTTGCGACCGTTCGCATGAG

Product: outer membrane porin protein C

Products: NA

Alternate protein names: Outer membrane protein 1B; Porin ompC [H]

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYFSDNKSEDGDQTYVRLGFKGETQVTDQLTGYGQWEYQ
IQGNTSEDNKENSWTRVAFAGLKFQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFG
LVDGLNFAVQYQGKNGSVSGEGMTNNGRGALRQNGDGVGGSITYDYEGFGIGAAVSSSKRTDDQNGSYISNGVVRNYIGT
GDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGLRPSVAYLQSKGKNLGVINGRNYD
DEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF

Sequences:

>Translated_376_residues
MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYFSDNKSEDGDQTYVRLGFKGETQVTDQLTGYGQWEYQ
IQGNTSEDNKENSWTRVAFAGLKFQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFG
LVDGLNFAVQYQGKNGSVSGEGMTNNGRGALRQNGDGVGGSITYDYEGFGIGAAVSSSKRTDDQNGSYISNGVVRNYIGT
GDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGLRPSVAYLQSKGKNLGVINGRNYD
DEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF
>Mature_376_residues
MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYFSDNKSEDGDQTYVRLGFKGETQVTDQLTGYGQWEYQ
IQGNTSEDNKENSWTRVAFAGLKFQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFG
LVDGLNFAVQYQGKNGSVSGEGMTNNGRGALRQNGDGVGGSITYDYEGFGIGAAVSSSKRTDDQNGSYISNGVVRNYIGT
GDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGLRPSVAYLQSKGKNLGVINGRNYD
DEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF

Specific function: Forms passive diffusion pores which allow small molecular weight hydrophilic materials across the outer membrane [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1788544, Length=380, Percent_Identity=90.2631578947368, Blast_Score=662, Evalue=0.0,
Organism=Escherichia coli, GI1787641, Length=386, Percent_Identity=66.580310880829, Blast_Score=452, Evalue=1e-128,
Organism=Escherichia coli, GI1786436, Length=380, Percent_Identity=56.3157894736842, Blast_Score=407, Evalue=1e-115,
Organism=Escherichia coli, GI1787160, Length=389, Percent_Identity=58.0976863753213, Blast_Score=399, Evalue=1e-112,

Paralogues:

None

Copy number: 6020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 19068 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 41416; Mature: 41416

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: PS00576 GRAM_NEG_PORIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYFSDNKSEDGDQTYVRLG
CEEEHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCCEEEEEE
FKGETQVTDQLTGYGQWEYQIQGNTSEDNKENSWTRVAFAGLKFQDVGSFDYGRNYGVVY
CCCCCEEHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEEECCEEEECCCCCCCCCCCEEE
DVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQYQGKNGSVSG
ECCCHHHHHHHHCCCCCCCCHHHHHCCCEEEEEECCCEEEEECCCEEEEEEECCCCCCCC
EGMTNNGRGALRQNGDGVGGSITYDYEGFGIGAAVSSSKRTDDQNGSYISNGVVRNYIGT
CCCCCCCCCCEECCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEECCCCHHHHCCC
GDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGLRPS
CCCCCEECCCEEECCCCEEEEEEEEECCCCEECCCCCCCCCCCCCEEEEEEEECCCCCCC
VAYLQSKGKNLGVINGRNYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRDA
HHHHHHCCCEEEEECCCCCCHHHHHHHHHCCEEEEECCCCCEEEEEEEEEECCCCCCCCC
GINTDNIVALGLVYQF
CCCCCCEEEEEEEECC
>Mature Secondary Structure
MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYFSDNKSEDGDQTYVRLG
CEEEHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCCEEEEEE
FKGETQVTDQLTGYGQWEYQIQGNTSEDNKENSWTRVAFAGLKFQDVGSFDYGRNYGVVY
CCCCCEEHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEEECCEEEECCCCCCCCCCCEEE
DVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQYQGKNGSVSG
ECCCHHHHHHHHCCCCCCCCHHHHHCCCEEEEEECCCEEEEECCCEEEEEEECCCCCCCC
EGMTNNGRGALRQNGDGVGGSITYDYEGFGIGAAVSSSKRTDDQNGSYISNGVVRNYIGT
CCCCCCCCCCEECCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEECCCCHHHHCCC
GDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGLRPS
CCCCCEECCCEEECCCCEEEEEEEEECCCCEECCCCCCCCCCCCCEEEEEEEECCCCCCC
VAYLQSKGKNLGVINGRNYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRDA
HHHHHHCCCEEEEECCCCCCHHHHHHHHHCCEEEEECCCCCEEEEEEEEEECCCCCCCCC
GINTDNIVALGLVYQF
CCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]