| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is 187733046
Identifier: 187733046
GI number: 187733046
Start: 1773884
End: 1774414
Strand: Direct
Name: 187733046
Synonym: SbBS512_E1940
Alternate gene names: NA
Gene position: 1773884-1774414 (Clockwise)
Preceding gene: 187730613
Following gene: 187733675
Centisome position: 38.43
GC content: 55.18
Gene sequence:
>531_bases ATGAGTAATTCGTTGTTACCACCATCAGCCAGCAATTTCATGCGTTGTGCCGAAGCCGTCGGAACACGCATTACAGACAT TCCGGTAGACCTCAACACGCTGTGGTCGCCGGACACCTGCCCGGTGCATCTGCTGCCTTATCTCGCCTGGGCGTTTTCCG TTGACCGCTGGGATCGCAACTGGCCGGAAGAGACAAAGCGACAGGTTATTCGTGATGCATGGCTGATACACCGACACAAA GGGACCATCAGCGCACTGCGCCGGGCCATTGAGCCGCTGGGATACCTCATTCGCGTGTCTGAGTGGTGGGAGTTCGGCGG AGAACCGGGAACATTTACCGTTGAAGTCGGCACGCTGGACAGTGGCGTGACGGAGGAAATGTATCTGGAAATGGAGCGGT TGATTGCTGATGCCCGCCCGGTCAGCCGCCACATGACAGGGCTGAATATCATTCAGGAAATTCCGGGGGATATTTTCGCA GCGGCGGCAACTTATGACGGTGAAGTTATTACCATTTATCCAGGCGATTAA
Upstream 100 bases:
>100_bases GTGCAACGCGTGGAGATAATCGAACCCACACAGAATATGGCCATCAGCGACATACAGGCGGCGCGCTGTGAGTCATTCAC CATCAGCGAAGGTGGACGCA
Downstream 100 bases:
>100_bases GCATGAGTACCACAACACGAAAATTTAAAACCATTATCACCGATACGGGTGCAAAAAAATTAGCTCAGGTAGCCGCGCCA GATGGTAAGCCTGTCCGCCT
Product: phage tail protein I
Products: NA
Alternate protein names: Tail Protein I; Phage Tail Protein; Phage-Related Tail Protein; Bacteriophage P2-Related Tail Formation Protein; Bacteriophage Protein; Pyocin R2_PP Tail Formation Protein GpI; Tail Protein I Prophage; Phage P2 Baseplate Assembly GpI-Like Protein; Prophage Tail Protein; Phage-Related Tail Protein I; Phage Tail-Like Protein; Bacteriophage Tail Protein I; Tail Formation-Like Protein; Bacteriophage P2 Baseplate Assembly Protein GPI; Bacteriophage P2-Related Tail Formation Protein GpI; Bacteriophage Tail Formation Protein I
Number of amino acids: Translated: 176; Mature: 175
Protein sequence:
>176_residues MSNSLLPPSASNFMRCAEAVGTRITDIPVDLNTLWSPDTCPVHLLPYLAWAFSVDRWDRNWPEETKRQVIRDAWLIHRHK GTISALRRAIEPLGYLIRVSEWWEFGGEPGTFTVEVGTLDSGVTEEMYLEMERLIADARPVSRHMTGLNIIQEIPGDIFA AAATYDGEVITIYPGD
Sequences:
>Translated_176_residues MSNSLLPPSASNFMRCAEAVGTRITDIPVDLNTLWSPDTCPVHLLPYLAWAFSVDRWDRNWPEETKRQVIRDAWLIHRHK GTISALRRAIEPLGYLIRVSEWWEFGGEPGTFTVEVGTLDSGVTEEMYLEMERLIADARPVSRHMTGLNIIQEIPGDIFA AAATYDGEVITIYPGD >Mature_175_residues SNSLLPPSASNFMRCAEAVGTRITDIPVDLNTLWSPDTCPVHLLPYLAWAFSVDRWDRNWPEETKRQVIRDAWLIHRHKG TISALRRAIEPLGYLIRVSEWWEFGGEPGTFTVEVGTLDSGVTEEMYLEMERLIADARPVSRHMTGLNIIQEIPGDIFAA AATYDGEVITIYPGD
Specific function: Unknown
COG id: COG4385
COG function: function code R; Bacteriophage P2-related tail formation protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19874; Mature: 19743
Theoretical pI: Translated: 4.52; Mature: 4.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNSLLPPSASNFMRCAEAVGTRITDIPVDLNTLWSPDTCPVHLLPYLAWAFSVDRWDRN CCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC WPEETKRQVIRDAWLIHRHKGTISALRRAIEPLGYLIRVSEWWEFGGEPGTFTVEVGTLD CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC SGVTEEMYLEMERLIADARPVSRHMTGLNIIQEIPGDIFAAAATYDGEVITIYPGD CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHEEEEEECCCCEEEEECCC >Mature Secondary Structure SNSLLPPSASNFMRCAEAVGTRITDIPVDLNTLWSPDTCPVHLLPYLAWAFSVDRWDRN CCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC WPEETKRQVIRDAWLIHRHKGTISALRRAIEPLGYLIRVSEWWEFGGEPGTFTVEVGTLD CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC SGVTEEMYLEMERLIADARPVSRHMTGLNIIQEIPGDIFAAAATYDGEVITIYPGD CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHEEEEEECCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA