| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is insB1 [H]
Identifier: 187733032
GI number: 187733032
Start: 2189909
End: 2190319
Strand: Direct
Name: insB1 [H]
Synonym: SbBS512_E2396
Alternate gene names: 187733032
Gene position: 2189909-2190319 (Clockwise)
Preceding gene: 187733906
Following gene: 187733183
Centisome position: 47.44
GC content: 54.26
Gene sequence:
>411_bases ATGTCGCGCCAGTGCACGCATTATGGGCGTTGGCCTCAACACGGTTTTACGTCACTTAAAAAACTCAGGCCGCAGTCGGT AACCTCGCGCATACAACCGGGCAGTGATGTGATTGTCTGCGCTGAAATGGACGAACAGTGGGGCTACGTCGGTGCTAAAT CACGTCAGCGCTGGCTGTTTTACGCGTATGACAGGATACGGAGGACGGTTGTGGCGCACGTCTTCGGTGAACGCACTCTG GCCACACTGGAGCGTCTTCTGAGCCTGCTGTCGGCCTTTGAGGTCGTGGTATGGATGACGGATGGCTGGCCGCTGTATGA ATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGAC AACATCTGTAA
Upstream 100 bases:
>100_bases GCTCTCATTGCCGTAAAACATGGCAACTACAGTTCACTTACACCGCCTCTCAGCCCGGTACGCACCAGAAAATCATTGAT ATGGCCATGAATGGCGTCGG
Downstream 100 bases:
>100_bases GCGTCAACGGAGCACCGTATTGACGCTTATTTATTGGTGAGTGCTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGA AGGCCATTCCGGCAGTACGC
Product: IS1 protein InsB
Products: NA
Alternate protein names: IS1a [H]
Number of amino acids: Translated: 136; Mature: 135
Protein sequence:
>136_residues MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHL
Sequences:
>Translated_136_residues MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHL >Mature_135_residues SRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLA TLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHL
Specific function: Absolutely required for transposition of IS1 [H]
COG id: COG1662
COG function: function code L; Transposase and inactivated derivatives, IS1 family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 27 family [H]
Homologues:
Organism=Escherichia coli, GI1789853, Length=136, Percent_Identity=88.9705882352941, Blast_Score=258, Evalue=1e-70, Organism=Escherichia coli, GI1788203, Length=136, Percent_Identity=88.9705882352941, Blast_Score=258, Evalue=1e-70, Organism=Escherichia coli, GI1786203, Length=136, Percent_Identity=88.9705882352941, Blast_Score=258, Evalue=1e-70, Organism=Escherichia coli, GI1786470, Length=136, Percent_Identity=87.5, Blast_Score=253, Evalue=3e-69, Organism=Escherichia coli, GI1786459, Length=136, Percent_Identity=87.5, Blast_Score=253, Evalue=3e-69, Organism=Escherichia coli, GI1787223, Length=136, Percent_Identity=86.7647058823529, Blast_Score=252, Evalue=6e-69,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005063 [H]
Pfam domain/function: PF03400 Transposase_27 [H]
EC number: NA
Molecular weight: Translated: 16130; Mature: 15999
Theoretical pI: Translated: 10.75; Mature: 10.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLF CCCCCCCCCCCCCHHHHHHHHCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCHHH YAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKR HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHCCHHHHHHHH YTQRIERHNLNLRQHL HHHHHHHCCCCHHCCC >Mature Secondary Structure SRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLF CCCCCCCCCCCCHHHHHHHHCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCHHH YAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKR HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHCCHHHHHHHH YTQRIERHNLNLRQHL HHHHHHHCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 375010; 1849492; 1630901; 9278503 [H]