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The map label for this gene is ydhX [H]

Identifier: 187733026

GI number: 187733026

Start: 1713963

End: 1714682

Strand: Reverse

Name: ydhX [H]

Synonym: SbBS512_E1871

Alternate gene names: 187733026

Gene position: 1714682-1713963 (Counterclockwise)

Preceding gene: 187730741

Following gene: 187732165

Centisome position: 37.15

GC content: 50.14

Gene sequence:

>720_bases
ATGTCATGGATAGGGTGGACAGTTGCAGCCACTGCATTAGGGGATAATCAGATGTCCTTCACTCGACGCAAATTTGTTCT
GGGGATGGGAACAGTAATCTTTTTTACTGGTTCTGCGTCTTCTCTGTTAGCGAACACGAGGCAAGAAAAGGAAGTTCGGT
ATGCCATGATTCATGACGAGTCACGGTGCAATGGCTGTAATATTTGCGCCCGCGCATGCCGTAAAACTAACCACGTCCCC
GCTCAGGGAAGCCGTTTATCGATAGCACACATTCCAGTCACCGATAACGACAACGAAACGCAGTATCACTTTTTTCGCCA
GTCATGTCAGCACTGCGAAGATGCTCCGTGCATCGACGTTTGCCCGACGGGGGCATCGTGGCGTGATGAGCAGGGGCTCG
TGCGGGTAGAAAAATCGCAGTGCATCGGCTGCAGTTATTGCATTGGCGCTTGTCCGTACCAGGTTCGCTACCTTAACCCT
GTCACTAAAGTGGCAGATAAATGTGATTTCTGCGCTGAGTCCCGACTGGCAAAAGGCTTTCCGCCCATTTGCGTCAGCGC
CTGTCCGGAACACGCATTGATCTTTGGTCGCGAAGATAGCCCAGAAATTCAGGCGTGGTTGCAGGATAATAAATACTATC
AATATCAGCTACCTGGTGCCGGGAAACCGCATCTGTATCGCCGGTTCGGTCAACATTTGATTAAAAAGGAAAATGTATGA

Upstream 100 bases:

>100_bases
GTACTTGTTTAGTGAGCGATTTATGACCTATGGCAAGGCTTATGGCTTATGCGAATGGTTCGAGGTAGAGCAGTTTCAGA
ACCCCTGAAATTTCAGGGAG

Downstream 100 bases:

>100_bases
ACCCGTCGCAACATGCTGAACAGTTTCAGAGCCAGTTAGCGAACTATGTGCCACAGTTCACTCCCGAATTTTGGCCGGTG
TGGTTGATCATTGCCGGAGT

Product: iron-sulfur cluster-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MSWIGWTVAATALGDNQMSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVP
AQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGLVRVEKSQCIGCSYCIGACPYQVRYLNP
VTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV

Sequences:

>Translated_239_residues
MSWIGWTVAATALGDNQMSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVP
AQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGLVRVEKSQCIGCSYCIGACPYQVRYLNP
VTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>Mature_238_residues
SWIGWTVAATALGDNQMSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPA
QGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGLVRVEKSQCIGCSYCIGACPYQVRYLNPV
TKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV

Specific function: Unknown

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI226510944, Length=222, Percent_Identity=99.0990990990991, Blast_Score=465, Evalue=1e-132,
Organism=Escherichia coli, GI2367345, Length=213, Percent_Identity=49.2957746478873, Blast_Score=216, Evalue=1e-57,
Organism=Escherichia coli, GI1787122, Length=155, Percent_Identity=38.7096774193548, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787872, Length=152, Percent_Identity=38.8157894736842, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1789370, Length=209, Percent_Identity=30.622009569378, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1790326, Length=240, Percent_Identity=27.0833333333333, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787749, Length=188, Percent_Identity=29.7872340425532, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1789067, Length=158, Percent_Identity=35.4430379746835, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787963, Length=151, Percent_Identity=28.476821192053, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI2367245, Length=144, Percent_Identity=36.8055555555556, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1787740, Length=86, Percent_Identity=34.8837209302326, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788811, Length=149, Percent_Identity=34.2281879194631, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787478, Length=86, Percent_Identity=34.8837209302326, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789079, Length=98, Percent_Identity=37.7551020408163, Blast_Score=60, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26883; Mature: 26752

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
8.4 %Cys+Met (Translated Protein)
6.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSWIGWTVAATALGDNQMSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDE
CCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHEEEEEEECC
SRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDV
CCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEE
CPTGASWRDEQGLVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGF
CCCCCCCCCCCCCEEECCCCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCC
PPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
CCHHHHCCCCCEEEECCCCCHHHHHEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SWIGWTVAATALGDNQMSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDE
CCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHEEEEEEECC
SRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDV
CCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEE
CPTGASWRDEQGLVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGF
CCCCCCCCCCCCCEEECCCCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCC
PPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
CCHHHHCCCCCEEEECCCCCHHHHHEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]