| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is 187732764
Identifier: 187732764
GI number: 187732764
Start: 235340
End: 236110
Strand: Direct
Name: 187732764
Synonym: SbBS512_E0227
Alternate gene names: NA
Gene position: 235340-236110 (Clockwise)
Preceding gene: 187731740
Following gene: 187733383
Centisome position: 5.1
GC content: 39.95
Gene sequence:
>771_bases ATGATTTGCACTAATCAGCTTCGTTACACTGGCAAAGATGGCGTTTACTTTCATCTACAAGGCCAACCAGATAATTTCTT GTCACTATCAGCAACTGAAAACATGGAATTTGACAGCCCTATGATGGTTACCACTCAAAATATGCAATCAGGGCAGACTG TAACAGATAATGTTCAAAGAGCACCCAGAACAATCACTATTAGTGGTGTGGTTGTGGTTGGTGAATCCGGTAGTATCCTT ATCTCAAGAGATAATAAGCTGGTGGAGAACTTCATCGACACTCTTGAAAGCTGGCGTGACCAGAAGCAGATTATTTCAGT CATCTGTAAAGATGGAATTAAAATTGATGACTCCATTATTACAAGCTTTAAAGCCTCTAAAGATGTTGGAATTTCTAATG GCCTAAGAATCCAGCTAACTTTTCAGGAAATTAACTTCAAAGCTATTGTTGGTCAAACAGATATTTCAGCAGCAACTGGA AAGACAGCTACTACAAATGATGGTGGTGCTACCAGTAAAAAGAATACTGGTAACACTACGACAAGCTTAGGTAACGGTAT GTTGATGTGTCAGGAGCTATATAATCGCTCTACGAGTGAACTCACTAATGAGCAACTTCAAGCCCGTATCAATTGTGGTA AAAATGTCAGAGTTGAGAATGGAAAAAGCACCTTCTCAGATGCCGCTAATGAGCAAGCTTCAAAGGTGCTTAAGTCGGGT AATGCTTTACGGAAGTACTCTGTGAATCCGAATAAGAAGGGCACTTACTGA
Upstream 100 bases:
>100_bases TTTACGTAGCTCACGCTTAACAGAGAAAATACTTATATATCAAAGGCTTGGTTAAAAATGATTAAAATACACTAAGTCTT TGAAATCAAAGGAGAATTTA
Downstream 100 bases:
>100_bases TTTTGCTTTTGTGTGTATAATCTCTTTGCATGTATAAATACACAGGGTGTATAAGAAAGTGAAGATTATTCATGTGGATA TGGACTGCTTTTTCGCGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 256; Mature: 256
Protein sequence:
>256_residues MICTNQLRYTGKDGVYFHLQGQPDNFLSLSATENMEFDSPMMVTTQNMQSGQTVTDNVQRAPRTITISGVVVVGESGSIL ISRDNKLVENFIDTLESWRDQKQIISVICKDGIKIDDSIITSFKASKDVGISNGLRIQLTFQEINFKAIVGQTDISAATG KTATTNDGGATSKKNTGNTTTSLGNGMLMCQELYNRSTSELTNEQLQARINCGKNVRVENGKSTFSDAANEQASKVLKSG NALRKYSVNPNKKGTY
Sequences:
>Translated_256_residues MICTNQLRYTGKDGVYFHLQGQPDNFLSLSATENMEFDSPMMVTTQNMQSGQTVTDNVQRAPRTITISGVVVVGESGSIL ISRDNKLVENFIDTLESWRDQKQIISVICKDGIKIDDSIITSFKASKDVGISNGLRIQLTFQEINFKAIVGQTDISAATG KTATTNDGGATSKKNTGNTTTSLGNGMLMCQELYNRSTSELTNEQLQARINCGKNVRVENGKSTFSDAANEQASKVLKSG NALRKYSVNPNKKGTY >Mature_256_residues MICTNQLRYTGKDGVYFHLQGQPDNFLSLSATENMEFDSPMMVTTQNMQSGQTVTDNVQRAPRTITISGVVVVGESGSIL ISRDNKLVENFIDTLESWRDQKQIISVICKDGIKIDDSIITSFKASKDVGISNGLRIQLTFQEINFKAIVGQTDISAATG KTATTNDGGATSKKNTGNTTTSLGNGMLMCQELYNRSTSELTNEQLQARINCGKNVRVENGKSTFSDAANEQASKVLKSG NALRKYSVNPNKKGTY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27903; Mature: 27903
Theoretical pI: Translated: 8.60; Mature: 8.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MICTNQLRYTGKDGVYFHLQGQPDNFLSLSATENMEFDSPMMVTTQNMQSGQTVTDNVQR CCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCHHHHHHH APRTITISGVVVVGESGSILISRDNKLVENFIDTLESWRDQKQIISVICKDGIKIDDSII CCCEEEEEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHH TSFKASKDVGISNGLRIQLTFQEINFKAIVGQTDISAATGKTATTNDGGATSKKNTGNTT HHHHCCCCCCCCCCEEEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TSLGNGMLMCQELYNRSTSELTNEQLQARINCGKNVRVENGKSTFSDAANEQASKVLKSG HHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCC NALRKYSVNPNKKGTY CCEEEECCCCCCCCCC >Mature Secondary Structure MICTNQLRYTGKDGVYFHLQGQPDNFLSLSATENMEFDSPMMVTTQNMQSGQTVTDNVQR CCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCHHHHHHH APRTITISGVVVVGESGSILISRDNKLVENFIDTLESWRDQKQIISVICKDGIKIDDSII CCCEEEEEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHH TSFKASKDVGISNGLRIQLTFQEINFKAIVGQTDISAATGKTATTNDGGATSKKNTGNTT HHHHCCCCCCCCCCEEEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TSLGNGMLMCQELYNRSTSELTNEQLQARINCGKNVRVENGKSTFSDAANEQASKVLKSG HHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCC NALRKYSVNPNKKGTY CCEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA