| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is ycgJ [H]
Identifier: 187732505
GI number: 187732505
Start: 1213928
End: 1214296
Strand: Direct
Name: ycgJ [H]
Synonym: SbBS512_E1331
Alternate gene names: 187732505
Gene position: 1213928-1214296 (Clockwise)
Preceding gene: 187734212
Following gene: 187730559
Centisome position: 26.3
GC content: 42.28
Gene sequence:
>369_bases ATGAATATGATGCGTATTTTTTATATCGGATTGTCAGGTGTGGGGATGATGTTCTCATCAATGGCGTCTGGACATGACGC TGGCGGACTTCAATCTCCGGCGTGCGGCGTTGTTTGCGACCCGTATATTTGTGTGAACTCAGATGGCATTTCCCCAGAGT TAACAAGGAAATATCTCGGCGAAAAAGCCGCTGAAAACTTACAATCATTACAAGGCTACGATCCCAGCGAATTTACATTC GCTAACGGTGTATTTTGCGATGTTAAAGAAAAATTATGTCGTGATGATCGTTATTTTGGTGTGGATGGTAAGCGGAGTGG AAAAATCAATCAAATCACCACAAAGATGTTATTTATGTGTCGTGAGTGA
Upstream 100 bases:
>100_bases TCTGTCAGGTCATCGTAACTCGTCCAGGTCAGCGGTTTTGATTACGGATTGATGATGAAATGAGCATAAGTGTTGTACGG TTGGATTATCAGGATGTGCT
Downstream 100 bases:
>100_bases TGCCTTGTTTACATTATGTTCTATTCGGCGGTAATGCTGCCAACTTACTGATTTAGTGTATGATGGTGATTTTAAGGTGC TTGCGTGGCTTCCATTTCCA
Product: putative fels-1 Prophage Protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 122; Mature: 122
Protein sequence:
>122_residues MNMMRIFYIGLSGVGMMFSSMASGHDAGGLQSPACGVVCDPYICVNSDGISPELTRKYLGEKAAENLQSLQGYDPSEFTF ANGVFCDVKEKLCRDDRYFGVDGKRSGKINQITTKMLFMCRE
Sequences:
>Translated_122_residues MNMMRIFYIGLSGVGMMFSSMASGHDAGGLQSPACGVVCDPYICVNSDGISPELTRKYLGEKAAENLQSLQGYDPSEFTF ANGVFCDVKEKLCRDDRYFGVDGKRSGKINQITTKMLFMCRE >Mature_122_residues MNMMRIFYIGLSGVGMMFSSMASGHDAGGLQSPACGVVCDPYICVNSDGISPELTRKYLGEKAAENLQSLQGYDPSEFTF ANGVFCDVKEKLCRDDRYFGVDGKRSGKINQITTKMLFMCRE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1787425, Length=122, Percent_Identity=98.3606557377049, Blast_Score=250, Evalue=2e-68,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008617 [H]
Pfam domain/function: PF05666 Fels1 [H]
EC number: NA
Molecular weight: Translated: 13450; Mature: 13450
Theoretical pI: Translated: 5.84; Mature: 5.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.9 %Cys (Translated Protein) 6.6 %Met (Translated Protein) 11.5 %Cys+Met (Translated Protein) 4.9 %Cys (Mature Protein) 6.6 %Met (Mature Protein) 11.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNMMRIFYIGLSGVGMMFSSMASGHDAGGLQSPACGVVCDPYICVNSDGISPELTRKYLG CCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCEEECCEEEECCCCCCHHHHHHHHH EKAAENLQSLQGYDPSEFTFANGVFCDVKEKLCRDDRYFGVDGKRSGKINQITTKMLFMC HHHHHHHHHHCCCCCCCEEECCCEEEHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHC RE CC >Mature Secondary Structure MNMMRIFYIGLSGVGMMFSSMASGHDAGGLQSPACGVVCDPYICVNSDGISPELTRKYLG CCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCEEECCEEEECCCCCCHHHHHHHHH EKAAENLQSLQGYDPSEFTFANGVFCDVKEKLCRDDRYFGVDGKRSGKINQITTKMLFMC HHHHHHHHHHCCCCCCCEEECCCEEEHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHC RE CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]