Click here to switch to the map view.

The map label for this gene is ybaT [H]

Identifier: 187732317

GI number: 187732317

Start: 411406

End: 412698

Strand: Direct

Name: ybaT [H]

Synonym: SbBS512_E0421

Alternate gene names: 187732317

Gene position: 411406-412698 (Clockwise)

Preceding gene: 187730794

Following gene: 187731718

Centisome position: 8.91

GC content: 53.05

Gene sequence:

>1293_bases
ATGATGAACACGGAAGGTAATAACGGTAACAAACCCCTCGGTCTATGGAATGTCGTTTCCATCGGTATTGGGGCAATGGT
GGGGGCGGGGATCTTCGCGCTGCTGGGGCAGGCTGCGTTGCTAATGGAAGCCTCGACCTGGGTCGCCTTTGCTTTTGGCG
GTATTGTGGCGATGTTTTCCGGTTATGCCTATGCGCGTCTGGGGGCGAGCTATCCCAGTAATGGCGGCATTATCGACTTC
TTTCGTCGCGGATTAGGCAACGGCGTCTTTTCGCTGGCGCTCTCGTTACTGTACCTGTTGACGCTGGCGGTGAGCATCGC
CATGGTCGCCCATGCTTTTGGCGCTTATGCCGTGCAGTTTTTGCATGAAGGCAGCCAGGAGGAGCACCTTATTTTGCTCT
ACGCGTTGGGGAGCATTGCGGTGATGACGCTTTTCAACTCCTTAAGCAACCATGCGGTAGGGCGGCTGGAAGTGATCCTC
GTCGGCATTAAAATGATGATCCTGTTATTGCTGATTATTGCCGGTGTCTGGTCGCTGCAACCAGCGCATATTTCCGTCTC
TGCGCCCCCCAGCTCCGGTGCGTTCTTCTCCTGTATTGGGATAACTTTCCTTGCCTATGCGGGCTTTGGCATGATGGCGA
ACGCGGCGGATAAAGTGAAAGATCCGCAGGTCATTATGCCACGGGCGTTTCTGGTGGCGATTGGCGTTACCACGTTGCTT
TATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCA
GGCTGCTTTTCCGCTGCTCGGACATGTGGGTTATGTGATCGTCGTCATCGGCGCTTTACTGGCGACGGCTTCAGCCATTA
ACGCGAACCTGTTCGCCGTGTTTAACATCATGGACAACATGGGCAGCGAACGCGAACTGCCGAAGCTAATGAATAAATCC
CTGTGGCGGCAGAGTACCTGGGGCAACATCATTGTCGTGGTGTTGATTATGCTGATGACGGCGGCACTGAATTTAGGCTC
ACTCGCCAGCGTTGCCAGCGCCACCTTTTTGATTTGCTACCTGGCGGTGTTTGTGGTGGCGATCCGCCTGCGTCATGATA
TTCACGCCTCGTTGCCGATTCTTATCGTTGGTACGTTGGTGATGTTGTTGGTGATCGTTGGCTTTATCTACAGTCTGTGG
TCCCAGGGTAGCCGTGCGTTGATATGGATTATTGGCTCACTCTTACTCAGCCTTATTGTGGCAATGGTCATGAAGCGCAA
TAAAACCGTATAA

Upstream 100 bases:

>100_bases
TCTCACCACCGCTGGACGAAGAAGGTAACAGTGTTCGCGGTCAAAAAATGGTGGCATCGGTCGCTAAGCAACTCGGCTAT
AACGTGTTTAAGGGCTGATC

Downstream 100 bases:

>100_bases
CATCTCTCTGTGCGCAGTACTTCCTGTATTATTGTGGTGGCGGTCGATATTCGCACTGGCAAAAAAACGTGCTTGAATAT
CTGTTGAAACCCTTTAACAA

Product: amino acid permease family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MMNTEGNNGNKPLGLWNVVSIGIGAMVGAGIFALLGQAALLMEASTWVAFAFGGIVAMFSGYAYARLGASYPSNGGIIDF
FRRGLGNGVFSLALSLLYLLTLAVSIAMVAHAFGAYAVQFLHEGSQEEHLILLYALGSIAVMTLFNSLSNHAVGRLEVIL
VGIKMMILLLLIIAGVWSLQPAHISVSAPPSSGAFFSCIGITFLAYAGFGMMANAADKVKDPQVIMPRAFLVAIGVTTLL
YISLALVLLSDVSALELEKYADTAVAQAAFPLLGHVGYVIVVIGALLATASAINANLFAVFNIMDNMGSERELPKLMNKS
LWRQSTWGNIIVVVLIMLMTAALNLGSLASVASATFLICYLAVFVVAIRLRHDIHASLPILIVGTLVMLLVIVGFIYSLW
SQGSRALIWIIGSLLLSLIVAMVMKRNKTV

Sequences:

>Translated_430_residues
MMNTEGNNGNKPLGLWNVVSIGIGAMVGAGIFALLGQAALLMEASTWVAFAFGGIVAMFSGYAYARLGASYPSNGGIIDF
FRRGLGNGVFSLALSLLYLLTLAVSIAMVAHAFGAYAVQFLHEGSQEEHLILLYALGSIAVMTLFNSLSNHAVGRLEVIL
VGIKMMILLLLIIAGVWSLQPAHISVSAPPSSGAFFSCIGITFLAYAGFGMMANAADKVKDPQVIMPRAFLVAIGVTTLL
YISLALVLLSDVSALELEKYADTAVAQAAFPLLGHVGYVIVVIGALLATASAINANLFAVFNIMDNMGSERELPKLMNKS
LWRQSTWGNIIVVVLIMLMTAALNLGSLASVASATFLICYLAVFVVAIRLRHDIHASLPILIVGTLVMLLVIVGFIYSLW
SQGSRALIWIIGSLLLSLIVAMVMKRNKTV
>Mature_430_residues
MMNTEGNNGNKPLGLWNVVSIGIGAMVGAGIFALLGQAALLMEASTWVAFAFGGIVAMFSGYAYARLGASYPSNGGIIDF
FRRGLGNGVFSLALSLLYLLTLAVSIAMVAHAFGAYAVQFLHEGSQEEHLILLYALGSIAVMTLFNSLSNHAVGRLEVIL
VGIKMMILLLLIIAGVWSLQPAHISVSAPPSSGAFFSCIGITFLAYAGFGMMANAADKVKDPQVIMPRAFLVAIGVTTLL
YISLALVLLSDVSALELEKYADTAVAQAAFPLLGHVGYVIVVIGALLATASAINANLFAVFNIMDNMGSERELPKLMNKS
LWRQSTWGNIIVVVLIMLMTAALNLGSLASVASATFLICYLAVFVVAIRLRHDIHASLPILIVGTLVMLLVIVGFIYSLW
SQGSRALIWIIGSLLLSLIVAMVMKRNKTV

Specific function: Probable amino-acid or metabolite transport protein [H]

COG id: COG0531

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI1786694, Length=430, Percent_Identity=99.3023255813954, Blast_Score=833, Evalue=0.0,
Organism=Caenorhabditis elegans, GI71995388, Length=333, Percent_Identity=24.6246246246246, Blast_Score=65, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI71995382, Length=333, Percent_Identity=24.6246246246246, Blast_Score=65, Evalue=9e-11,
Organism=Drosophila melanogaster, GI221331183, Length=304, Percent_Identity=25.3289473684211, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI17647653, Length=304, Percent_Identity=25.3289473684211, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24664379, Length=304, Percent_Identity=25.3289473684211, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI45550968, Length=402, Percent_Identity=22.8855721393035, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI19921172, Length=402, Percent_Identity=22.8855721393035, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI221512776, Length=397, Percent_Identity=23.9294710327456, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24666159, Length=397, Percent_Identity=23.9294710327456, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24651635, Length=317, Percent_Identity=22.7129337539432, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24651633, Length=317, Percent_Identity=22.7129337539432, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24667468, Length=333, Percent_Identity=25.5255255255255, Blast_Score=66, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 45674; Mature: 45674

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNTEGNNGNKPLGLWNVVSIGIGAMVGAGIFALLGQAALLMEASTWVAFAFGGIVAMFS
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GYAYARLGASYPSNGGIIDFFRRGLGNGVFSLALSLLYLLTLAVSIAMVAHAFGAYAVQF
CHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LHEGSQEEHLILLYALGSIAVMTLFNSLSNHAVGRLEVILVGIKMMILLLLIIAGVWSLQ
HHCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PAHISVSAPPSSGAFFSCIGITFLAYAGFGMMANAADKVKDPQVIMPRAFLVAIGVTTLL
CCEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHCCHHHCCCCCEEHHHHHHHHHHHHHHH
YISLALVLLSDVSALELEKYADTAVAQAAFPLLGHVGYVIVVIGALLATASAINANLFAV
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
FNIMDNMGSERELPKLMNKSLWRQSTWGNIIVVVLIMLMTAALNLGSLASVASATFLICY
HHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LAVFVVAIRLRHDIHASLPILIVGTLVMLLVIVGFIYSLWSQGSRALIWIIGSLLLSLIV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
AMVMKRNKTV
HHHHHCCCCC
>Mature Secondary Structure
MMNTEGNNGNKPLGLWNVVSIGIGAMVGAGIFALLGQAALLMEASTWVAFAFGGIVAMFS
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GYAYARLGASYPSNGGIIDFFRRGLGNGVFSLALSLLYLLTLAVSIAMVAHAFGAYAVQF
CHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LHEGSQEEHLILLYALGSIAVMTLFNSLSNHAVGRLEVILVGIKMMILLLLIIAGVWSLQ
HHCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PAHISVSAPPSSGAFFSCIGITFLAYAGFGMMANAADKVKDPQVIMPRAFLVAIGVTTLL
CCEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHCCHHHCCCCCEEHHHHHHHHHHHHHHH
YISLALVLLSDVSALELEKYADTAVAQAAFPLLGHVGYVIVVIGALLATASAINANLFAV
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
FNIMDNMGSERELPKLMNKSLWRQSTWGNIIVVVLIMLMTAALNLGSLASVASATFLICY
HHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LAVFVVAIRLRHDIHASLPILIVGTLVMLLVIVGFIYSLWSQGSRALIWIIGSLLLSLIV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
AMVMKRNKTV
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]