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The map label for this gene is ymdC [H]

Identifier: 187732294

GI number: 187732294

Start: 2078098

End: 2079528

Strand: Reverse

Name: ymdC [H]

Synonym: SbBS512_E2285

Alternate gene names: 187732294

Gene position: 2079528-2078098 (Counterclockwise)

Preceding gene: 187730705

Following gene: 187731000

Centisome position: 45.05

GC content: 50.59

Gene sequence:

>1431_bases
ATGAATGATTTGCCCCGGCTGGCGAGCGCGGTGCTGCCACTGTGTTCGCAACATCCCGGTCAGTGTGGTCTTTTCCCTCT
GGAGAAAAGTCTGGATGCGTTTGCCGCCCGGTATCGTCTGGCCGAAATGGCAGAGCATACGCTGGATGTTCAGTATTACA
TCTGGCAGGACGATATGTCGGGTCGGTTACTGTTTTCCGCCCTGTTAGCCGCAGCAAAGCGTGGCGTTCGCGTCCGTTTG
TTGCTGGACGACAACAATACGCCCGGACTTGACGATATTTTACGCTTGCTTGACAGCCATCCCCGCATTGAAGTCCGGCT
TTTTAATCCTTTCTCGTTTCGCTTGCTGCGTCCGCTTGGTTATATCACTGACTTTTCCCGTCTCAATCGCCGTATGCACA
ATAAAAGTTTCACTGTCGATGGCGTGGTTACCTTGGTGGGAGGACGAAATATTGGTGATGCCTATTTTGGGGCAGGGGAA
GAGCCACTTTTTTCGGATTTAGATGTTATGGCAATAGGACCCGTGGTAGAGGACGTTGCCGATGATTTCGCCCGCTACTG
GTATTGCAAATCGGTTTCACCCTTACAGCAGGTGCTGGATGTCCCGGAAGGTGAAATGGCGGATCGCATCGAGTTACCCG
CCTCCTGGCATAACGATGCCATGACGCATCGTTACTTACGCCAAATGGAATCCAGTCCGTTTATAAATCATCTGGTTGAT
GGAACGTTGCCGCTTATCTGGGCGAAAACACGTTTATTAAGTGATGATCCGGCGAAAGGGGAGGGCAAGGCAAAACGGCA
TTCACTGTTACCGCAGCGCCTGTTCGATATCATGGGCTCACCCAGTGAACGCATCGATATTATCTCTTCCTATTTTGTAC
CGACACGCGCAGGTGTGGCGCAACTCTTACGGATGGTGAGAAAAGGGGTAAAGATTGCGATCCTAACCAATTCTCTTGCC
GCTAACGATGTTGCTGTCGTCCATGCCGGATACGCGCGCTGGCGCAAAAAATTGCTCCGCTATGGCGTGGAATTATATGA
ACTCAAGCCGACGCGTGAACAAAGTAGTACGTTACACGATCGCGGCATAACCGGTAATTCCGGTGCCAGCCTGCATGCTA
AAACCTTTAGCATCGATGGTAAAACGGTGTTTATCGGCTCTTTCAATTTCGATCCACGTTCGACATTGCTCAATACTGAA
ATGGGCTTCGTGATAGAGAGCGAAACGCTGGCACAGTTAATTGATAAACGCTTTATACAGAGCCAGTATGATGCGGCCTG
GCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCAAAGAAAGAGATGATTCTCAAAAAAGAAC
CCGCCACCAGTTTCTGGAAGCGGGTTATGGTCAGACTGGCGTCGATATTGCCCGTGGAATGGTTATTGTAA

Upstream 100 bases:

>100_bases
GAATTTATTACCCGTCACGCTTTACCCGAACAGGTATACTTTGTCTGTTATGATGAAGAAAACGCCCACCTCTACGAAAG
ACTCCTTACCCAACAAGGAG

Downstream 100 bases:

>100_bases
ATGTGGCTTAACGGGCTGGTGCTTTATCGTTCTCACGCTTAACAACCGGTTTACCAGAAAACAAAAACTTCAGTAACGGG
ATGCGTAAATGAATTTCATA

Product: phopholipase D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 476; Mature: 476

Protein sequence:

>476_residues
MNDLPRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRL
LLDDNNTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGE
EPLFSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTHRYLRQMESSPFINHLVD
GTLPLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTNSLA
ANDVAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGITGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTE
MGFVIESETLAQLIDKRFIQSQYDAAWQLRLDRWGRINWVDRHAKKEMILKKEPATSFWKRVMVRLASILPVEWLL

Sequences:

>Translated_476_residues
MNDLPRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRL
LLDDNNTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGE
EPLFSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTHRYLRQMESSPFINHLVD
GTLPLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTNSLA
ANDVAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGITGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTE
MGFVIESETLAQLIDKRFIQSQYDAAWQLRLDRWGRINWVDRHAKKEMILKKEPATSFWKRVMVRLASILPVEWLL
>Mature_476_residues
MNDLPRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRL
LLDDNNTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGE
EPLFSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTHRYLRQMESSPFINHLVD
GTLPLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTNSLA
ANDVAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGITGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTE
MGFVIESETLAQLIDKRFIQSQYDAAWQLRLDRWGRINWVDRHAKKEMILKKEPATSFWKRVMVRLASILPVEWLL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=473, Percent_Identity=99.3657505285412, Blast_Score=966, Evalue=0.0,
Organism=Escherichia coli, GI1787007, Length=399, Percent_Identity=23.0576441102757, Blast_Score=76, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54027; Mature: 54027

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDLPRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMS
CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCC
GRLLFSALLAAAKRGVRVRLLLDDNNTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLG
CHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHH
YITDFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVEDVA
HHHHHHHHHHHHHCCCEEECEEEEEECCCCCCCHHCCCCCCCCCCCCCCEEEHHHHHHHH
DDFARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTHRYLRQMESSPFINHLVD
HHHHHHHHHCCCHHHHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCHHHHHHC
GTLPLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVA
CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHH
QLLRMVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHD
HHHHHHHCCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHCCCEEEEECCCHHHHHHHHH
RGITGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTEMGFVIESETLAQLIDKRFIQ
CCCCCCCCCEEEEEEEEECCCEEEEEECCCCCHHHHCCCCCCEEECHHHHHHHHHHHHHH
SQYDAAWQLRLDRWGRINWVDRHAKKEMILKKEPATSFWKRVMVRLASILPVEWLL
HHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHCC
>Mature Secondary Structure
MNDLPRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMS
CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCC
GRLLFSALLAAAKRGVRVRLLLDDNNTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLG
CHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHH
YITDFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVEDVA
HHHHHHHHHHHHHCCCEEECEEEEEECCCCCCCHHCCCCCCCCCCCCCCEEEHHHHHHHH
DDFARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTHRYLRQMESSPFINHLVD
HHHHHHHHHCCCHHHHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCHHHHHHC
GTLPLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVA
CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHH
QLLRMVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHD
HHHHHHHCCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHCCCEEEEECCCHHHHHHHHH
RGITGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTEMGFVIESETLAQLIDKRFIQ
CCCCCCCCCEEEEEEEEECCCEEEEEECCCCCHHHHCCCCCCEEECHHHHHHHHHHHHHH
SQYDAAWQLRLDRWGRINWVDRHAKKEMILKKEPATSFWKRVMVRLASILPVEWLL
HHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]