| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is cysJ
Identifier: 187732267
GI number: 187732267
Start: 2906360
End: 2908159
Strand: Direct
Name: cysJ
Synonym: SbBS512_E3111
Alternate gene names: 187732267
Gene position: 2906360-2908159 (Clockwise)
Preceding gene: 187732080
Following gene: 187732880
Centisome position: 62.96
GC content: 56.5
Gene sequence:
>1800_bases ATGACGACACAGGTCCCACCTTCCGCGTTGCTTCCGTTGAACCCGGAGCAACTGGCACGCCTTCAGGCGGCCACGACCGA TTTAACGCCTACCCAGCTTGCCTGGGTTTCTGGCTATTTCTGGGGCGTACTCAATCAGCAGCCTGCTGCGCTTGCAGCGA CGCCAGCGCCAGCCGCAGAAATGCCGGGTATAACTATTATCTCCGCCTCGCAAACCGGCAATGCGCGCCGGGTTGCTGAA GCATTACGCGATGATTTATTAGCAGCAAAACTGAACGTTAAGCTGGTGAACGCGGGCGACTATAAATTCAAACAAATCGC CAGCGAAAAACTGCTCATCGTAGTGACGTCAACGCAAGGGGAAGGGGAACCGCCGGAAGAAGCCGTCGCGCTGCATAAGT TCCTGTTCTCCAAAAAAGCGCCAAAGCTGGAAAACACCGCGTTTGCCGTGTTTAGCCTCGGCGATAGCTCTTATGAATTT TTCTGCCAGTCCGGGAAAGATTTCGACAGCAAGCTGGCGGAACTGGGTGGTGAACGCCTGCTCGACCGTGTCGATGCCGA TGTTGAATACCAGGCTGCTGCCAGCGAGTGGCGCGCCCGCGTGGTTGATGCGCTTAAATCGCGTGCGCCTGTCGCGGCAC CTTCGCAATCCGTCGCTACTGGCGCGGTAAATGAAATCCACGCCAGCCCGTACAGCAAAGACGCGCCGCTGGTGGCTAGC CTCTCTGTTAACCAGAAAATTACCGGGCGTAACTCTGAAAAAGACGTTCGCCATATCGAAATTGACTTAGGTGACTCGGG CCTGCGTTACCAGCCGGGTGACGCGCTGGGCGTCTGGTATCAGAACGATCCGGCACTGGTGAAAGAACTTGTCGAACTGC TGTGGCTGAAAGGCGATGAACCTGTCACCGTCGAGGGCAAAACGTTGCCTCTGAACGAAGCGCTACAGTGGCACTTCGAA CTGACCGTCAACACCGCCAACATTGTTGAGAATTACGCCACGCTTACCCGCAGCGAAACACTGCTGCCGCTGGTGGGCGA TAAAGCGAAGTTACAGCATTACGCCGCGACGACGCCGATTGTCGACATGGTGCGTTTCTCTCCGGCGCAACTGGATGCCG AAGCGCTGATTAATCTGCTGCGCCCGCTGACCCCGCGCCTGTATTCCATCGCCACCTCGCAGGCGGAAGTCGAGAACGAA GTACACGTCACCGTTGGTGTGGTGCGTTACGACGTGGAAGGCCGAGCCCGTGCCGGTGGTGCCTCCAGCTTCCTCGCGGA TCGCGTGGAAGAAGAGGGCGAAGTCCGCGTATTTATCGAACATAACGATAACTTTCGCCTGCCCGCTAACCCGGAAACCC CGGTGATTATGATTGGCCCAGGCACCGGTATTGCGCCGTTCCGCGCCTTTATGCAGCAACGCGCCGCCGACGAAGCGCCA GGTAAAAACTGGCTGTTCTTTGGTAATCCGCACTTTACGGAAGACTTCCTGTACCAGGTGGAGTGGCAGCGCTACGTCAA AGATGGCGTGCTGACACGTATCGATCTTGCCTGGTCGCGCGACCAAAAAGAAAAAGTTTACGTACAAGACAAACTGCGCG AACAGGGCGCGGAGCTGTGGCGCTGGATCAATGATGGTGCCCACATTTATGTCTGCGGCGACGCTAATCGCATGGCGAAA GACGTTGAGCAGGCACTTCTGGAAGTGATTGCCGAATTTGGTGGCATGGACACCGAAGCGGCGGATGAATTTTTAAGTGA GCTGCGCGTAGAGCGCCGTTATCAGCGAGATGTCTACTAA
Upstream 100 bases:
>100_bases TCTAACTCGGTGGCCAGTTTTTGTTGACCACTTCACTCTTCTGTTTTATGGGCGCTGACAGGGCGCAGAAACAGCTTTGC TTACTGGAACATAACGACGC
Downstream 100 bases:
>100_bases TGAGCGAAAAACATCCAGGGCCTTTAGTGGTCGAAGGAAAACTGACAGACGCCGAGCGCATGAAGCTTGAAAGCAACTAC CTGCGCGGCACCATTGCGGA
Product: sulfite reductase subunit alpha
Products: NA
Alternate protein names: SiR-FP [H]
Number of amino acids: Translated: 599; Mature: 598
Protein sequence:
>599_residues MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAEMPGITIISASQTGNARRVAE ALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEF FCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHASPYSKDAPLVAS LSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFE LTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIATSQAEVENE VHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAP GKNWLFFGNPHFTEDFLYQVEWQRYVKDGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAK DVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY
Sequences:
>Translated_599_residues MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAEMPGITIISASQTGNARRVAE ALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEF FCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHASPYSKDAPLVAS LSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFE LTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIATSQAEVENE VHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAP GKNWLFFGNPHFTEDFLYQVEWQRYVKDGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAK DVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY >Mature_598_residues TTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAEMPGITIISASQTGNARRVAEA LRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFF CQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHASPYSKDAPLVASL SVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFEL TVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIATSQAEVENEV HVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPG KNWLFFGNPHFTEDFLYQVEWQRYVKDGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKD VEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY
Specific function: Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow f
COG id: COG0369
COG function: function code P; Sulfite reductase, alpha subunit (flavoprotein)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 flavodoxin-like domain [H]
Homologues:
Organism=Homo sapiens, GI127139033, Length=601, Percent_Identity=30.4492512479201, Blast_Score=244, Evalue=2e-64, Organism=Homo sapiens, GI7657393, Length=601, Percent_Identity=29.783693843594, Blast_Score=230, Evalue=2e-60, Organism=Homo sapiens, GI221316709, Length=601, Percent_Identity=29.783693843594, Blast_Score=225, Evalue=7e-59, Organism=Homo sapiens, GI221316705, Length=610, Percent_Identity=29.344262295082, Blast_Score=223, Evalue=3e-58, Organism=Homo sapiens, GI24041029, Length=597, Percent_Identity=30.6532663316583, Blast_Score=222, Evalue=8e-58, Organism=Homo sapiens, GI10835173, Length=651, Percent_Identity=29.4930875576037, Blast_Score=202, Evalue=7e-52, Organism=Homo sapiens, GI221316707, Length=531, Percent_Identity=29.7551789077213, Blast_Score=200, Evalue=4e-51, Organism=Homo sapiens, GI40254422, Length=649, Percent_Identity=27.2727272727273, Blast_Score=166, Evalue=4e-41, Organism=Homo sapiens, GI169790956, Length=437, Percent_Identity=28.3752860411899, Blast_Score=160, Evalue=4e-39, Organism=Homo sapiens, GI169790958, Length=437, Percent_Identity=28.3752860411899, Blast_Score=160, Evalue=4e-39, Organism=Escherichia coli, GI1789123, Length=599, Percent_Identity=99.4991652754591, Blast_Score=1222, Evalue=0.0, Organism=Caenorhabditis elegans, GI17554134, Length=636, Percent_Identity=29.2452830188679, Blast_Score=235, Evalue=6e-62, Organism=Caenorhabditis elegans, GI17566446, Length=579, Percent_Identity=25.73402417962, Blast_Score=144, Evalue=1e-34, Organism=Caenorhabditis elegans, GI17531441, Length=394, Percent_Identity=24.8730964467005, Blast_Score=94, Evalue=3e-19, Organism=Saccharomyces cerevisiae, GI6321832, Length=636, Percent_Identity=28.1446540880503, Blast_Score=210, Evalue=5e-55, Organism=Saccharomyces cerevisiae, GI6321143, Length=397, Percent_Identity=31.7380352644836, Blast_Score=163, Evalue=6e-41, Organism=Saccharomyces cerevisiae, GI6325305, Length=626, Percent_Identity=22.8434504792332, Blast_Score=129, Evalue=1e-30, Organism=Drosophila melanogaster, GI17137192, Length=624, Percent_Identity=28.0448717948718, Blast_Score=216, Evalue=4e-56, Organism=Drosophila melanogaster, GI24582192, Length=510, Percent_Identity=29.8039215686275, Blast_Score=198, Evalue=1e-50, Organism=Drosophila melanogaster, GI78706872, Length=524, Percent_Identity=32.4427480916031, Blast_Score=186, Evalue=4e-47, Organism=Drosophila melanogaster, GI24583543, Length=524, Percent_Identity=32.4427480916031, Blast_Score=185, Evalue=7e-47, Organism=Drosophila melanogaster, GI78706876, Length=524, Percent_Identity=32.4427480916031, Blast_Score=185, Evalue=7e-47, Organism=Drosophila melanogaster, GI24660907, Length=595, Percent_Identity=26.0504201680672, Blast_Score=157, Evalue=2e-38, Organism=Drosophila melanogaster, GI24660903, Length=595, Percent_Identity=26.0504201680672, Blast_Score=157, Evalue=2e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010199 - InterPro: IPR003097 - InterPro: IPR017927 - InterPro: IPR001094 - InterPro: IPR008254 - InterPro: IPR001709 - InterPro: IPR023173 - InterPro: IPR001433 - InterPro: IPR017938 [H]
Pfam domain/function: PF00667 FAD_binding_1; PF00258 Flavodoxin_1; PF00175 NAD_binding_1 [H]
EC number: =1.8.1.2 [H]
Molecular weight: Translated: 66236; Mature: 66105
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: PS50902 FLAVODOXIN_LIKE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAE CCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCHHH MPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQG CCCEEEEECCCCCCHHHHHHHHHHHHHEEEEEEEEEECCCCHHHHHCCCCEEEEEECCCC EGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERL CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHCCCCCCHHHHHHHHCHHHH LDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHASPYSKDAPLVAS HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHHHCCCCCCCCCCEEEE LSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDE EECCCEECCCCCCCCCEEEEEEECCCCCEECCCCEEEEEECCCHHHHHHHHHHHHCCCCC PVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPI CEEECCCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCH VDMVRFSPAQLDAEALINLLRPLTPRLYSIATSQAEVENEVHVTVGVVRYDVEGRARAGG HHHHHCCCHHCCHHHHHHHHHCCCHHHHHHHCCHHHHCCCEEEEEEEEEEECCCCCCCCC ASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAP HHHHHHHHHCCCCCEEEEEEECCCEECCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCC GKNWLFFGNPHFTEDFLYQVEWQRYVKDGVLTRIDLAWSRDQKEKVYVQDKLREQGAELW CCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHH RWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY HHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAE CCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCHHH MPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQG CCCEEEEECCCCCCHHHHHHHHHHHHHEEEEEEEEEECCCCHHHHHCCCCEEEEEECCCC EGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERL CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHCCCCCCHHHHHHHHCHHHH LDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHASPYSKDAPLVAS HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHHHCCCCCCCCCCEEEE LSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDE EECCCEECCCCCCCCCEEEEEEECCCCCEECCCCEEEEEECCCHHHHHHHHHHHHCCCCC PVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPI CEEECCCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCH VDMVRFSPAQLDAEALINLLRPLTPRLYSIATSQAEVENEVHVTVGVVRYDVEGRARAGG HHHHHCCCHHCCHHHHHHHHHCCCHHHHHHHCCHHHHCCCEEEEEEEEEEECCCCCCCCC ASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAP HHHHHHHHHCCCCCEEEEEEECCCEECCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCC GKNWLFFGNPHFTEDFLYQVEWQRYVKDGVLTRIDLAWSRDQKEKVYVQDKLREQGAELW CCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHH RWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY HHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA