| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is 187732132
Identifier: 187732132
GI number: 187732132
Start: 1462880
End: 1463311
Strand: Direct
Name: 187732132
Synonym: SbBS512_E1608
Alternate gene names: NA
Gene position: 1462880-1463311 (Clockwise)
Preceding gene: 187732651
Following gene: 187731577
Centisome position: 31.69
GC content: 50.0
Gene sequence:
>432_bases TTGTCTAATTCGTCAGATTCTGACCAGACGGTTCAGGCTGTACGCTTACAGTTGATGCAGTCGTTGTACGACTGGATACA GTTGCAGAGGAAAACGCTGTCGAAACATGCGGAGATGGCGAAGGCGTTCGACTATATCCTGAATCACTGGAATGCGCTGA ACGAGTTCTGTCGTGACGGCTGGGTGGAAATAGACAACAACATCGGTGAAAACGCGTTACGATCGGTGGCGGTTGGAAGA AAAAATTATCTCTTTTTCGGCTCAGACAAGGGAGGAGAAAGTGCGGCGATCATCTACAGTCTGCTGGTCACCTGCAAACA GAACGAAGTGGAGCCGGAGGACTGGTTGCGCGAAGTGATCGAGAAGCTCAATGACTGGCCGTCGAACCAAGTGCATGAAC TGCTGCCCTGGAACTTCTCGTCTGTAAAATAA
Upstream 100 bases:
>100_bases TTCGGGAGGATAATTAGGGCAGCCTTTTCGCCTGCCGGGATTCACATTTTTCTGCATATCTGACACTTTGGTTCCCACTA CTTATTTGGTGGACACCACT
Downstream 100 bases:
>100_bases TCCTTACGCTACGTACTTCTCGGGGCGCTTACGATTTATCGCCGTCAGCGGGAGCTGAAGGAAGAGCTGAATAGTCTGAA GGATTTGAATTCGGTTAGGA
Product: transposase family
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 143; Mature: 142
Protein sequence:
>143_residues MSNSSDSDQTVQAVRLQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGR KNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK
Sequences:
>Translated_143_residues MSNSSDSDQTVQAVRLQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGR KNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK >Mature_142_residues SNSSDSDQTVQAVRLQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGRK NYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 25 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004291 [H]
Pfam domain/function: PF03050 Transposase_25 [H]
EC number: NA
Molecular weight: Translated: 16538; Mature: 16406
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNSSDSDQTVQAVRLQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC WVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVI CEEECCCCCHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH EKLNDWPSNQVHELLPWNFSSVK HHHHCCCCCHHHHHCCCCCCCCC >Mature Secondary Structure SNSSDSDQTVQAVRLQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC WVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVI CEEECCCCCHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH EKLNDWPSNQVHELLPWNFSSVK HHHHCCCCCHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]