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The map label for this gene is ycjD [H]

Identifier: 187731997

GI number: 187731997

Start: 1392878

End: 1393213

Strand: Reverse

Name: ycjD [H]

Synonym: SbBS512_E1525

Alternate gene names: 187731997

Gene position: 1393213-1392878 (Counterclockwise)

Preceding gene: 187731416

Following gene: 187732195

Centisome position: 30.18

GC content: 50.3

Gene sequence:

>336_bases
GTGATGGATAAAATAAAATCAAATGCGCGTGATTTAAGACGCAATCTCACTTTGCAGGAACGAAAGCTCTGGCGATATCT
TCGCAGCCGACGTTTTGGTGATTTCAAATTTCGCCGTCAACATCCGGTGGGGAGCTACATTCTCGATTTTGCTTGCTGCT
CGGCGCGCGTAGTCGTTGAGCTGGATGGTGGGCAGCATGATTTGGCAGTTGCCTATGATACCAGGCGCACTAGCTGGCTT
GAGTCGCAGGGCTGGACCGTGCTGCGTTTCTGGAATAACGAGATTGATTGTAATGAGGAGGCGGTGCTGGAGATTATTCG
TAAGCGTACAGCCTGA

Upstream 100 bases:

>100_bases
TTGACAGCGGATGCGTGGCGTAAAGATCGCTAATTTTCTGAATCCTCCTTCCAGATTATCCACCTCATTCTGACAAGAGA
TTAAATCTTGTCAGAATGAG

Downstream 100 bases:

>100_bases
ACCGTCTGGTCAGAATCTGACGAATTAGACAAAGTGGTGTCCACCAAATAAGTAGTGGGAACCAAAGTGTCAGATATGCA
GAAAAATGTGAATCCCGGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MMDKIKSNARDLRRNLTLQERKLWRYLRSRRFGDFKFRRQHPVGSYILDFACCSARVVVELDGGQHDLAVAYDTRRTSWL
ESQGWTVLRFWNNEIDCNEEAVLEIIRKRTA

Sequences:

>Translated_111_residues
MMDKIKSNARDLRRNLTLQERKLWRYLRSRRFGDFKFRRQHPVGSYILDFACCSARVVVELDGGQHDLAVAYDTRRTSWL
ESQGWTVLRFWNNEIDCNEEAVLEIIRKRTA
>Mature_111_residues
MMDKIKSNARDLRRNLTLQERKLWRYLRSRRFGDFKFRRQHPVGSYILDFACCSARVVVELDGGQHDLAVAYDTRRTSWL
ESQGWTVLRFWNNEIDCNEEAVLEIIRKRTA

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=106, Percent_Identity=95.2830188679245, Blast_Score=212, Evalue=4e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 13294; Mature: 13294

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDKIKSNARDLRRNLTLQERKLWRYLRSRRFGDFKFRRQHPVGSYILDFACCSARVVVE
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHCCCEEEEE
LDGGQHDLAVAYDTRRTSWLESQGWTVLRFWNNEIDCNEEAVLEIIRKRTA
ECCCCCEEEEEECCCCHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MMDKIKSNARDLRRNLTLQERKLWRYLRSRRFGDFKFRRQHPVGSYILDFACCSARVVVE
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHCCCEEEEE
LDGGQHDLAVAYDTRRTSWLESQGWTVLRFWNNEIDCNEEAVLEIIRKRTA
ECCCCCEEEEEECCCCHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]