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The map label for this gene is yfiE [H]

Identifier: 187731980

GI number: 187731980

Start: 2750820

End: 2751146

Strand: Reverse

Name: yfiE [H]

Synonym: SbBS512_E2945

Alternate gene names: 187731980

Gene position: 2751146-2750820 (Counterclockwise)

Preceding gene: 187731009

Following gene: 187731581

Centisome position: 59.6

GC content: 49.54

Gene sequence:

>327_bases
TTGTCTGGAGATTCAGGGGGCCAGTCTAATGTCTTCCGGCAGATATTTGAGAGCACGCTGCGTCAGCGGCGGATCACGGT
GGAAAACACCATTGAGCTGTTAAGCATTGAAAGTATCAAACGTTGTGTCGCGGCGAATATCGGTGTCAGTTACTTGCCCC
GCTTTGCGGTGGAAAAAGAGCTTGAGAGCGGAGAATTAATTGAATTGCCTTTTGGCGAACAGTCGCAGACCATTACGGCC
ATGTGCGCACACCATGCTGGAAAAGCGGTTAGCCCGGCGATGCACACTTTTATTCAGTGTATTGAAGAGTGTTTTTTGCC
GGGATAA

Upstream 100 bases:

>100_bases
GCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTACTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATC
ACTTATTTAAGTGATACTGG

Downstream 100 bases:

>100_bases
AAATAATGCCGGGCTTAAACCCGGCACCCAACTTGTCGACGAAGTGCGTTTTGTTCATGCCGGATGCGGCGTGAACGCCT
TATCCGGCCTACAAGATCGT

Product: putative HTH-type transcriptional regulator YfiE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 107

Protein sequence:

>108_residues
MSGDSGGQSNVFRQIFESTLRQRRITVENTIELLSIESIKRCVAANIGVSYLPRFAVEKELESGELIELPFGEQSQTITA
MCAHHAGKAVSPAMHTFIQCIEECFLPG

Sequences:

>Translated_108_residues
MSGDSGGQSNVFRQIFESTLRQRRITVENTIELLSIESIKRCVAANIGVSYLPRFAVEKELESGELIELPFGEQSQTITA
MCAHHAGKAVSPAMHTFIQCIEECFLPG
>Mature_107_residues
SGDSGGQSNVFRQIFESTLRQRRITVENTIELLSIESIKRCVAANIGVSYLPRFAVEKELESGELIELPFGEQSQTITAM
CAHHAGKAVSPAMHTFIQCIEECFLPG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082132, Length=98, Percent_Identity=92.8571428571429, Blast_Score=188, Evalue=8e-50,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 11902; Mature: 11771

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGDSGGQSNVFRQIFESTLRQRRITVENTIELLSIESIKRCVAANIGVSYLPRFAVEKE
CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LESGELIELPFGEQSQTITAMCAHHAGKAVSPAMHTFIQCIEECFLPG
CCCCCEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SGDSGGQSNVFRQIFESTLRQRRITVENTIELLSIESIKRCVAANIGVSYLPRFAVEKE
CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LESGELIELPFGEQSQTITAMCAHHAGKAVSPAMHTFIQCIEECFLPG
CCCCCEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9205837 [H]