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The map label for this gene is yibH [H]

Identifier: 187731943

GI number: 187731943

Start: 3746707

End: 3747843

Strand: Reverse

Name: yibH [H]

Synonym: SbBS512_E4014

Alternate gene names: 187731943

Gene position: 3747843-3746707 (Counterclockwise)

Preceding gene: 187731482

Following gene: 187734073

Centisome position: 81.19

GC content: 52.68

Gene sequence:

>1137_bases
ATGGATCTATTGATTGTTTTAACTTACGTGGCGCTGGCGTGGGCGGTCTTTAAAATCTTCCGCATTCCGGTAAATCAGTG
GACGCTGGCGACGGCGGCGCTGGGAGGCGTGTTTCTGGTGAGTGGTTTGATTTTGTTGATGAACTACAACCACCCTTACA
CTTTTACCGCGCAAAAGGCAGTGATAGCGATCCCTATCACGCCACAGGTGACGGGAATTGTTACTGAAGTCACTGACAAG
AATAATCAGCTTATTCAAAAGGGCGAGGTGCTTTTTAAGCTCGACCCGGTTCGTTACCAGGCGCGAGTTGACAGACTTCA
GGCTGACCTGATGACGGCGACGCATAATATAAAGACGCTGCGTGCGCAGCTCACTGAAGCGCAGGCCAACACCACCCAGG
TTTCAGCGGAGCGCGACCGTCTGTTTAAAAATTATCAACGTTACTTGAAAGGCAGCCAGGCGGCGGTGAATCCGTTCTCG
GAACGTGACATCGACGATGCGCGGCAAAATTTCCTCGCGCAGGATGCGCTGGTGAAAGGCTCGGTGGCGGAGCAGGCGCA
GATCCAGAGCCAGCTCGACAGTATGGTTAACGGCGAGCAATCGCAGATTGTGAGCTTAAGAGCGCAACTTACTGAAGCAA
AATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATAC
GCAGCTGCCTTGCCGCTGCGTCCGGTGATGGTCTTCATCCCCGAGCAAAAACGGCAAATTGTCGCCCAATTTCGGCAAAA
CTCGCTGTTACGTCTGAAACCCGGCGATGATGCGGAAGTGGTGTTTAACGCGCTACCTAGGCAGGTGTTTCACGGCAAAC
TGACTAGTATTTTACCTGTCGTGCCAGGCGGTTCTTATCAGGCGCAGGGGGGATTGCAATCATTAACGGTCGTGCCCGGC
ACGGACGGTGTGCTGGGAACCATTGAACTGGACCCTAACGATGATATCGATGCCTTACTCGACGGCATCTACGCCCAGGT
GGCGGTTTACTCCGACCATTTCAGCCATGTTTCGGTGATGCGGAAAGTGCTGCTAAGAATGACCAGCTGGATGCATTATC
TTTATTTGGATCATTGA

Upstream 100 bases:

>100_bases
ACCCGGAAATCGCCTCACTTTCTGACCGAATTTCCCGGCTGGAGCATCAACTCGCCGCCGAGAAAAAGACTGACTATTCC
ACGTTCCCGGAGATCTAATT

Downstream 100 bases:

>100_bases
GGGGGAGGGGGGAGATTATGGAACTTTGCTCCTTGTAAGGACTAATTATTTTTGCATATTACTTCATTAGCTGCGATGAT
TTTTCTTTAATATTCATTAT

Product: auxiliary transport protein, membrane fusion protein family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MDLLIVLTYVALAWAVFKIFRIPVNQWTLATAALGGVFLVSGLILLMNYNHPYTFTAQKAVIAIPITPQVTGIVTEVTDK
NNQLIQKGEVLFKLDPVRYQARVDRLQADLMTATHNIKTLRAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFS
ERDIDDARQNFLAQDALVKGSVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLIRPGTY
AAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGDDAEVVFNALPRQVFHGKLTSILPVVPGGSYQAQGGLQSLTVVPG
TDGVLGTIELDPNDDIDALLDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWMHYLYLDH

Sequences:

>Translated_378_residues
MDLLIVLTYVALAWAVFKIFRIPVNQWTLATAALGGVFLVSGLILLMNYNHPYTFTAQKAVIAIPITPQVTGIVTEVTDK
NNQLIQKGEVLFKLDPVRYQARVDRLQADLMTATHNIKTLRAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFS
ERDIDDARQNFLAQDALVKGSVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLIRPGTY
AAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGDDAEVVFNALPRQVFHGKLTSILPVVPGGSYQAQGGLQSLTVVPG
TDGVLGTIELDPNDDIDALLDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWMHYLYLDH
>Mature_378_residues
MDLLIVLTYVALAWAVFKIFRIPVNQWTLATAALGGVFLVSGLILLMNYNHPYTFTAQKAVIAIPITPQVTGIVTEVTDK
NNQLIQKGEVLFKLDPVRYQARVDRLQADLMTATHNIKTLRAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFS
ERDIDDARQNFLAQDALVKGSVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLIRPGTY
AAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGDDAEVVFNALPRQVFHGKLTSILPVVPGGSYQAQGGLQSLTVVPG
TDGVLGTIELDPNDDIDALLDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWMHYLYLDH

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI1790024, Length=378, Percent_Identity=99.2063492063492, Blast_Score=761, Evalue=0.0,
Organism=Escherichia coli, GI1790012, Length=378, Percent_Identity=76.7195767195767, Blast_Score=612, Evalue=1e-176,
Organism=Escherichia coli, GI1790519, Length=274, Percent_Identity=26.6423357664234, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87081951, Length=254, Percent_Identity=24.4094488188976, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788711, Length=237, Percent_Identity=21.9409282700422, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 42062; Mature: 42062

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLIVLTYVALAWAVFKIFRIPVNQWTLATAALGGVFLVSGLILLMNYNHPYTFTAQKA
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCE
VIAIPITPQVTGIVTEVTDKNNQLIQKGEVLFKLDPVRYQARVDRLQADLMTATHNIKTL
EEEEECCCCCCEEEEEECCCCCHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
RAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFSERDIDDARQNFLAQDALVKG
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCC
SVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLIRPGTY
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHEEECCCCCCEEEEEECCCCE
AAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGDDAEVVFNALPRQVFHGKLTSILPV
EEECCCCEEEEEECCHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHCHHHHHCEE
VPGGSYQAQGGLQSLTVVPGTDGVLGTIELDPNDDIDALLDGIYAQVAVYSDHFSHVSVM
CCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RKVLLRMTSWMHYLYLDH
HHHHHHHHHHHHEEEECC
>Mature Secondary Structure
MDLLIVLTYVALAWAVFKIFRIPVNQWTLATAALGGVFLVSGLILLMNYNHPYTFTAQKA
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCE
VIAIPITPQVTGIVTEVTDKNNQLIQKGEVLFKLDPVRYQARVDRLQADLMTATHNIKTL
EEEEECCCCCCEEEEEECCCCCHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
RAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFSERDIDDARQNFLAQDALVKG
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCC
SVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLIRPGTY
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHEEECCCCCCEEEEEECCCCE
AAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGDDAEVVFNALPRQVFHGKLTSILPV
EEECCCCEEEEEECCHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHCHHHHHCEE
VPGGSYQAQGGLQSLTVVPGTDGVLGTIELDPNDDIDALLDGIYAQVAVYSDHFSHVSVM
CCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RKVLLRMTSWMHYLYLDH
HHHHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]