Click here to switch to the map view.

The map label for this gene is ygbL

Identifier: 187731896

GI number: 187731896

Start: 2927995

End: 2928633

Strand: Reverse

Name: ygbL

Synonym: SbBS512_E3136

Alternate gene names: 187731896

Gene position: 2928633-2927995 (Counterclockwise)

Preceding gene: 187732452

Following gene: 187731495

Centisome position: 63.45

GC content: 53.52

Gene sequence:

>639_bases
ATGAGCGATTTCGCAAAAGTAGAGCAGTCTTTGCGAGAGGAGATGACGCGGATTGCCAGTTCATTCTTTCAGCGCGGCTA
TGCAACCGGTTCGGCTGGCAATCTGTCGCTGCTTTTACCTGACGGGAATTTACTGGCGACACCGACAGGTTCATGCCTGG
GCAATCTCGATCCGCAGCGGCTTTCCAAAGTCGCCGCGGATGGCGAATGGTTAAGTGGTGACAAACCCTCGAAAGAGGTG
CTCTTTCATCTGGCGCTGTATCGCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCT
TTCCTGCCTGCAAGGGCTGGACAGCAGCAACGTTATTCGTCCGTTCACACCATACGTGGTGATGCGGATGGGAAATGTCC
CGCTGGTGCCCTATTACCGACCGGGCGATAAACGCATCGCACAGGATCTGGCGGAACTGGCAGCAGACAATCAGGCTTTT
TTACTGGCAAATCATGGCCCAGTGGTTTGCGGTGAAAGCCTGCAAGAAGCCGCCAACAATATGGAAGAGCTGGAGGAAAC
GGCAAAACTGATTTTTATTCTCGGTGACCGCCCGATCCGTTATCTGACCGCAGGTGAAATTGCGGAATTAAGGAGTTAA

Upstream 100 bases:

>100_bases
CCGTGGGTAAACGCACTGGATAAGCCTGTCTCACTCGCCCTTAAATCTGGCAACTTCGGTGATGAAGCCTTTTTTCACGA
GCCCAAAGAGAGTTTTTATC

Downstream 100 bases:

>100_bases
TGCAATGCCTCGTTTTGCAGCTAATTTATCCATGATGTTCACCGAAGTGCCTTTTATTGAACGCTTCGCCGCAGCGCGAA
AAGCCGGGTTCGATGCTGTG

Product: putative aldolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MSDFAKVEQSLREEMTRIASSFFQRGYATGSAGNLSLLLPDGNLLATPTGSCLGNLDPQRLSKVAADGEWLSGDKPSKEV
LFHLALYRNNPRCKAVVHLHSTWSTALSCLQGLDSSNVIRPFTPYVVMRMGNVPLVPYYRPGDKRIAQDLAELAADNQAF
LLANHGPVVCGESLQEAANNMEELEETAKLIFILGDRPIRYLTAGEIAELRS

Sequences:

>Translated_212_residues
MSDFAKVEQSLREEMTRIASSFFQRGYATGSAGNLSLLLPDGNLLATPTGSCLGNLDPQRLSKVAADGEWLSGDKPSKEV
LFHLALYRNNPRCKAVVHLHSTWSTALSCLQGLDSSNVIRPFTPYVVMRMGNVPLVPYYRPGDKRIAQDLAELAADNQAF
LLANHGPVVCGESLQEAANNMEELEETAKLIFILGDRPIRYLTAGEIAELRS
>Mature_211_residues
SDFAKVEQSLREEMTRIASSFFQRGYATGSAGNLSLLLPDGNLLATPTGSCLGNLDPQRLSKVAADGEWLSGDKPSKEVL
FHLALYRNNPRCKAVVHLHSTWSTALSCLQGLDSSNVIRPFTPYVVMRMGNVPLVPYYRPGDKRIAQDLAELAADNQAFL
LANHGPVVCGESLQEAANNMEELEETAKLIFILGDRPIRYLTAGEIAELRS

Specific function: Unknown

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. AraD/FucA subfamily

Homologues:

Organism=Escherichia coli, GI1789094, Length=212, Percent_Identity=100, Blast_Score=439, Evalue=1e-125,
Organism=Escherichia coli, GI1789164, Length=199, Percent_Identity=31.6582914572864, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YGBL_ECOLI (Q46890)

Other databases:

- EMBL:   AF242208
- EMBL:   AF242210
- EMBL:   U29579
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   F65054
- RefSeq:   AP_003305.1
- RefSeq:   NP_417218.1
- ProteinModelPortal:   Q46890
- SMR:   Q46890
- DIP:   DIP-12113N
- STRING:   Q46890
- PRIDE:   Q46890
- EnsemblBacteria:   EBESCT00000004898
- EnsemblBacteria:   EBESCT00000014330
- GeneID:   947197
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW2708
- KEGG:   eco:b2738
- EchoBASE:   EB2909
- EcoGene:   EG13106
- eggNOG:   COG0235
- GeneTree:   EBGT00050000009318
- HOGENOM:   HBG541069
- OMA:   IVHLHST
- ProtClustDB:   PRK08130
- BioCyc:   EcoCyc:G7419-MONOMER
- Genevestigator:   Q46890
- InterPro:   IPR001303
- Gene3D:   G3DSA:3.40.225.10

Pfam domain/function: PF00596 Aldolase_II; SSF53639 Aldolase_II_N

EC number: NA

Molecular weight: Translated: 23223; Mature: 23092

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDFAKVEQSLREEMTRIASSFFQRGYATGSAGNLSLLLPDGNLLATPTGSCLGNLDPQR
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEECCCCCHHCCCCHHH
LSKVAADGEWLSGDKPSKEVLFHLALYRNNPRCKAVVHLHSTWSTALSCLQGLDSSNVIR
HHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCC
PFTPYVVMRMGNVPLVPYYRPGDKRIAQDLAELAADNQAFLLANHGPVVCGESLQEAANN
CCCHHHEEEECCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCEEECHHHHHHHHH
MEELEETAKLIFILGDRPIRYLTAGEIAELRS
HHHHHHHHHEEEEECCCCEEEEECCHHHHHCC
>Mature Secondary Structure 
SDFAKVEQSLREEMTRIASSFFQRGYATGSAGNLSLLLPDGNLLATPTGSCLGNLDPQR
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEECCCCCHHCCCCHHH
LSKVAADGEWLSGDKPSKEVLFHLALYRNNPRCKAVVHLHSTWSTALSCLQGLDSSNVIR
HHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCC
PFTPYVVMRMGNVPLVPYYRPGDKRIAQDLAELAADNQAFLLANHGPVVCGESLQEAANN
CCCHHHEEEECCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCEEECHHHHHHHHH
MEELEETAKLIFILGDRPIRYLTAGEIAELRS
HHHHHHHHHEEEEECCCCEEEEECCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10986240; 9278503