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The map label for this gene is ydcI [H]

Identifier: 187731336

GI number: 187731336

Start: 1503339

End: 1504262

Strand: Reverse

Name: ydcI [H]

Synonym: SbBS512_E1647

Alternate gene names: 187731336

Gene position: 1504262-1503339 (Counterclockwise)

Preceding gene: 187733608

Following gene: 187733053

Centisome position: 32.59

GC content: 50.32

Gene sequence:

>924_bases
ATGGAAAAAAATAGTCTGTTTAGTCAGCGCATCCGTTTGCGCCACCTTCATACATTCGTAGCTGTCGCACAACAAGGAAC
TTTGGGGCGCGCGGCTGAAACCCTTAATTTGAGTCAACCTGCGCTCTCTAAGACATTGAATGAACTGGAGCAGCTGACGG
GCACTCGCTTGTTTGAGCGTGGTCGTCAGGGGGCGCAACTTACCTTACCCGGCGAACAATTTTTAACGCATGCAGTCAGA
GTTCTTGACGCCATCAACACTGCCGGACAGTCGCTTCATCGTAAAGAAGGTCTTAATAATGATGTCGTCAGGATTGGTGC
ACTACCTACTGCGGCACTGGGGATATTACCTTCGGTTATAGGTCAGTTTCATCAGCAACAAAAAGAGACGACCTTGCAAG
TTGCGACAATGAGTAACCCTATGATTCTGGCGGGTTTGAAAACCGGGGAAATCGATATCGGCATTGGTCGGATGTCAGAT
CCTGAACTGATGACCGGGCTTAATTACGAACTGCTGTTTCTTGAATCGCTGAAGCTGGTTGTCCGCCCTAATCACCCGCT
ACTTCAGGAGAACGTAACGCTAAGCCGAGTGCTGGAATGGCCGGTCGTTGTATCACCAGAAGGCACTGCGCCACGCCAGC
ATTCAGATGCATTAGTACAGAGCCAGGGATGTAAAATTCCTTCGGGTTGTATCGAAACGCTGTCTGCTTCGCTATCTCGT
CAACTTACGGTTGAATACGACTACGTGTGGTTTGTCCCTTCTGGCGCGGTAAAAGACGACCTGCGTCATGCCACGCTGGT
GGCCCTGCCTGTTCCGGGACATGGTGCAGGCGAACCGATTGGAATACTGACCCGCGTAGATGCGATGTTCTCTTCTGGTT
GCCAGTTGATGATTAACGCTATTCGAAAATCAATGCCGTTCTGA

Upstream 100 bases:

>100_bases
TAACACAATTGCTTTAATTGTTAATTATATTTTGCAATCAAGTTATCATAATCAAACAACTTCACTTGTCAGCGACACCG
CTTCGTTTTTAACATCGCTT

Downstream 100 bases:

>100_bases
AAGGTGAAGGGATCTGTCGATCCCTCCTTGAACATTTTCACACCGTAGCGAAACTAACTGGTTCACCCGCTCCGCGAGGT
TCTGCCGACACAGAATGTTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGTRLFERGRQGAQLTLPGEQFLTHAVR
VLDAINTAGQSLHRKEGLNNDVVRIGALPTAALGILPSVIGQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSD
PELMTGLNYELLFLESLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSR
QLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAGEPIGILTRVDAMFSSGCQLMINAIRKSMPF

Sequences:

>Translated_307_residues
MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGTRLFERGRQGAQLTLPGEQFLTHAVR
VLDAINTAGQSLHRKEGLNNDVVRIGALPTAALGILPSVIGQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSD
PELMTGLNYELLFLESLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSR
QLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAGEPIGILTRVDAMFSSGCQLMINAIRKSMPF
>Mature_307_residues
MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGTRLFERGRQGAQLTLPGEQFLTHAVR
VLDAINTAGQSLHRKEGLNNDVVRIGALPTAALGILPSVIGQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSD
PELMTGLNYELLFLESLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSR
QLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAGEPIGILTRVDAMFSSGCQLMINAIRKSMPF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081904, Length=307, Percent_Identity=98.6970684039088, Blast_Score=619, Evalue=1e-179,
Organism=Escherichia coli, GI1787601, Length=264, Percent_Identity=29.1666666666667, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI157672245, Length=227, Percent_Identity=33.4801762114537, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788887, Length=181, Percent_Identity=34.2541436464088, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787879, Length=195, Percent_Identity=32.8205128205128, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1790262, Length=219, Percent_Identity=29.6803652968037, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI145693105, Length=298, Percent_Identity=22.4832214765101, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788748, Length=179, Percent_Identity=28.4916201117318, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789204, Length=185, Percent_Identity=29.1891891891892, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI2367136, Length=150, Percent_Identity=31.3333333333333, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788296, Length=211, Percent_Identity=30.8056872037915, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1790399, Length=301, Percent_Identity=22.9235880398671, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788481, Length=212, Percent_Identity=26.4150943396226, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33448; Mature: 33448

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGTRLFER
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
GRQGAQLTLPGEQFLTHAVRVLDAINTAGQSLHRKEGLNNDVVRIGALPTAALGILPSVI
CCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHH
GQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSDPELMTGLNYELLFLESLKLV
HHHHHHHHHHEEEEEECCCCEEEEECCCCCEEEECCCCCCCHHHHCCCEEEEEEECCEEE
VRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSR
ECCCCCCHHCCCHHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCC
QLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAGEPIGILTRVDAMFSSGCQLMINA
EEEEEEEEEEEECCCCHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCHHHHHHH
IRKSMPF
HHHHCCC
>Mature Secondary Structure
MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGTRLFER
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
GRQGAQLTLPGEQFLTHAVRVLDAINTAGQSLHRKEGLNNDVVRIGALPTAALGILPSVI
CCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHH
GQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSDPELMTGLNYELLFLESLKLV
HHHHHHHHHHEEEEEECCCCEEEEECCCCCEEEECCCCCCCHHHHCCCEEEEEEECCEEE
VRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSR
ECCCCCCHHCCCHHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCC
QLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAGEPIGILTRVDAMFSSGCQLMINA
EEEEEEEEEEEECCCCHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCHHHHHHH
IRKSMPF
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]