| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is 187731177
Identifier: 187731177
GI number: 187731177
Start: 1542900
End: 1543127
Strand: Reverse
Name: 187731177
Synonym: SbBS512_E1693
Alternate gene names: NA
Gene position: 1543127-1542900 (Counterclockwise)
Preceding gene: 187734193
Following gene: 187732810
Centisome position: 33.43
GC content: 42.98
Gene sequence:
>228_bases TTGCCATGTTTTACGGCAATGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGCTTTTGCCATTACGCACCACGCCTTCAG TAGCGGAGCAGGAAGGACATCTGATGGAAATGGAAGCCACGCAAGCACCTTAAAATCACCATCATACACTAAATCAGTAA GTTGGCAGCATTACCTTTTTTATATACATGATTCACTGATATCAGTGGCATTAATAGCTATTATATAG
Upstream 100 bases:
>100_bases ATCGGAAAATCGATACTGGAAAAACTCTAACTCGGTGGCCAGTTTTTGTTGACCACTTCAGGTGCGTACCGGGCTGAGAG GCGGTGTAAGTGAACTGTAG
Downstream 100 bases:
>100_bases CTTCAGCTCCTTTTTTCATACCTTAAGGAAAAATTGCCCCCTCCCCCAAAAAGTATCGTTTTTTTACATTAAACCGATCC AGTTTAGGATAGTGTAAAGC
Product: putative IS1 encoded protein
Products: NA
Alternate protein names: Transposase; Glycosy Hydrolase Family; Outer Membrane Fimbrial User Protein; Allantoinase; Ankyrin-Repeat Protein A; Efflux Pump Component MtrF; Minor Fimbrial Subunit
Number of amino acids: Translated: 75; Mature: 74
Protein sequence:
>75_residues MPCFTAMRAEIALMSGSAFAITHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYLFYIHDSLISVALIAII
Sequences:
>Translated_75_residues MPCFTAMRAEIALMSGSAFAITHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYLFYIHDSLISVALIAII >Mature_74_residues PCFTAMRAEIALMSGSAFAITHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYLFYIHDSLISVALIAII
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 8019; Mature: 7888
Theoretical pI: Translated: 8.52; Mature: 8.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPCFTAMRAEIALMSGSAFAITHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYLF CCCCHHHHEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE YIHDSLISVALIAII HHHHHHHHHHHHHCC >Mature Secondary Structure PCFTAMRAEIALMSGSAFAITHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYLF CCCHHHHEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE YIHDSLISVALIAII HHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA