Click here to switch to the map view.

The map label for this gene is ompN

Identifier: 187730461

GI number: 187730461

Start: 1468210

End: 1469343

Strand: Reverse

Name: ompN

Synonym: SbBS512_E1614

Alternate gene names: 187730461

Gene position: 1469343-1468210 (Counterclockwise)

Preceding gene: 187733332

Following gene: 187733749

Centisome position: 31.83

GC content: 46.56

Gene sequence:

>1134_bases
ATGAAAAGCAAAGTACTGGCACTTTTAATTCCTGCCCTGCTCGCCGCAGGTGCTGCACATGCAGCCGAAGTTTATAATAA
AGACGGCAACAAATTAGATCTGTATGGCAAAGTTGATGGCCTGCATTATTTTTCTGATAATTCAGCGAAAGATGGCGATC
AGAGCTATGCGCGTCTGGGTTTTAAAGGCGAAACCCAAATTAACGATCAACTCACTGGCTACGGTCAATGGGAATACAAT
ATTCAGGCAAACAACACTGAATCTTCAAAAAACCAGTCATGGACCCGTCTGGCATTTGCCGGGCTGAAATTTGCAGATTA
CGGTTCTTTCGATTACGGACGTAATTATGGCGTAATGTACGACATCGAAGGCTGGACAGATATGCTGCCTGAATTTGGCG
GTGACTCTTATACCAATGCAGACAACTTTATGACTGGTCGAGCCAATGGCGTCGCGACTTATCGTAATACTGATTTCTTC
GGTCTGGTAAATGGTCTGAACTTCGCGGTGCAGTATCAAGGTAACAACGAAGGAGCCAGTAATGGTCAGGAAGGCACCAA
CAACGGACGTGATGTTCGCCATGAAAACGGTGACGGCTGGGGTTTTTCCACAACATATGATTTAGGCATGGGCTTTAGCG
CTGGTGCGGCATACACCTCTTCTGACCGCACCAATGACCAGGTTAACCATACTGCGGCGGGTGGTGATAAAGCAGACGCG
TGGACTGCTGGGCTAAAATACGATGCTAACAATATTTACCTGGCAACCATGTATTCAGAAACGCGTAATATGACCCCGTT
TGGCGACAGCGATTATGCTGTGGCAAACAAAACCCAGAATTTTGAAGTCACTGCCCAGTACCAGTTTGATTTTGGTCTGC
GTCCGGCAGTCTCTTTCCTGATGTCTAAAGGCCGTGACCTGCACGCTGCCGGTGGTGCAGACAACCCGGCAGGTGTTGAT
GATAAAGATCTGGTTAAATACGCCGATGTTGGCGCGACTTACTATTTCAATAAAAACATGTCCACCTACGTTGACTATAA
AATCAACCTGTTGGATGAAGATGACAGCTTCTACGCTGCCAATGGCATCTCTACCGATGATATTGTCGCTTTAGGTCTGG
TTTATCAGTTCTAA

Upstream 100 bases:

>100_bases
ACAAATGATATTTATCGGCTAACTGAACTTCTCCTTTAGGATGTTTTCACTCCCCGGAATGGGGATAAAAGGCAAATAAA
ATAACTAAAGGATTTATTCA

Downstream 100 bases:

>100_bases
ATCCTCCTGCCCGCTGTTATGGCGGGCTTTTTCTGCTTATTCTTCCTCCTTTGATCTAAATTAAAAATGTGAACTCCATC
ATTACACAAAAAGTGTCATC

Product: outer membrane protein N

Products: NA

Alternate protein names: Porin ompN [H]

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MKSKVLALLIPALLAAGAAHAAEVYNKDGNKLDLYGKVDGLHYFSDNSAKDGDQSYARLGFKGETQINDQLTGYGQWEYN
IQANNTESSKNQSWTRLAFAGLKFADYGSFDYGRNYGVMYDIEGWTDMLPEFGGDSYTNADNFMTGRANGVATYRNTDFF
GLVNGLNFAVQYQGNNEGASNGQEGTNNGRDVRHENGDGWGFSTTYDLGMGFSAGAAYTSSDRTNDQVNHTAAGGDKADA
WTAGLKYDANNIYLATMYSETRNMTPFGDSDYAVANKTQNFEVTAQYQFDFGLRPAVSFLMSKGRDLHAAGGADNPAGVD
DKDLVKYADVGATYYFNKNMSTYVDYKINLLDEDDSFYAANGISTDDIVALGLVYQF

Sequences:

>Translated_377_residues
MKSKVLALLIPALLAAGAAHAAEVYNKDGNKLDLYGKVDGLHYFSDNSAKDGDQSYARLGFKGETQINDQLTGYGQWEYN
IQANNTESSKNQSWTRLAFAGLKFADYGSFDYGRNYGVMYDIEGWTDMLPEFGGDSYTNADNFMTGRANGVATYRNTDFF
GLVNGLNFAVQYQGNNEGASNGQEGTNNGRDVRHENGDGWGFSTTYDLGMGFSAGAAYTSSDRTNDQVNHTAAGGDKADA
WTAGLKYDANNIYLATMYSETRNMTPFGDSDYAVANKTQNFEVTAQYQFDFGLRPAVSFLMSKGRDLHAAGGADNPAGVD
DKDLVKYADVGATYYFNKNMSTYVDYKINLLDEDDSFYAANGISTDDIVALGLVYQF
>Mature_377_residues
MKSKVLALLIPALLAAGAAHAAEVYNKDGNKLDLYGKVDGLHYFSDNSAKDGDQSYARLGFKGETQINDQLTGYGQWEYN
IQANNTESSKNQSWTRLAFAGLKFADYGSFDYGRNYGVMYDIEGWTDMLPEFGGDSYTNADNFMTGRANGVATYRNTDFF
GLVNGLNFAVQYQGNNEGASNGQEGTNNGRDVRHENGDGWGFSTTYDLGMGFSAGAAYTSSDRTNDQVNHTAAGGDKADA
WTAGLKYDANNIYLATMYSETRNMTPFGDSDYAVANKTQNFEVTAQYQFDFGLRPAVSFLMSKGRDLHAAGGADNPAGVD
DKDLVKYADVGATYYFNKNMSTYVDYKINLLDEDDSFYAANGISTDDIVALGLVYQF

Specific function: Non-specific porin [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1787641, Length=377, Percent_Identity=99.4694960212202, Blast_Score=759, Evalue=0.0,
Organism=Escherichia coli, GI1788544, Length=385, Percent_Identity=67.012987012987, Blast_Score=472, Evalue=1e-134,
Organism=Escherichia coli, GI1786436, Length=378, Percent_Identity=59.7883597883598, Blast_Score=449, Evalue=1e-127,
Organism=Escherichia coli, GI1787160, Length=388, Percent_Identity=57.2164948453608, Blast_Score=405, Evalue=1e-114,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 41240; Mature: 41240

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKVLALLIPALLAAGAAHAAEVYNKDGNKLDLYGKVDGLHYFSDNSAKDGDQSYARLG
CCCHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCCHHHHCC
FKGETQINDQLTGYGQWEYNIQANNTESSKNQSWTRLAFAGLKFADYGSFDYGRNYGVMY
CCCCCEECCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCEEECCCCCCCCCCCCEEE
DIEGWTDMLPEFGGDSYTNADNFMTGRANGVATYRNTDFFGLVNGLNFAVQYQGNNEGAS
EECCHHHHHHHHCCCCCCCCCCEEECCCCCEEEEECCCEEEEECCCEEEEEECCCCCCCC
NGQEGTNNGRDVRHENGDGWGFSTTYDLGMGFSAGAAYTSSDRTNDQVNHTAAGGDKADA
CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEECCCCCCCCCCCEEECCCCCCCC
WTAGLKYDANNIYLATMYSETRNMTPFGDSDYAVANKTQNFEVTAQYQFDFGLRPAVSFL
EECCEEECCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCEEEEEEEEECCCCHHHHHHH
MSKGRDLHAAGGADNPAGVDDKDLVKYADVGATYYFNKNMSTYVDYKINLLDEDDSFYAA
HHCCCEEEECCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCEEEEEEEEEEECCCCEEEE
NGISTDDIVALGLVYQF
CCCCHHHEEEEEEEECC
>Mature Secondary Structure
MKSKVLALLIPALLAAGAAHAAEVYNKDGNKLDLYGKVDGLHYFSDNSAKDGDQSYARLG
CCCHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCCHHHHCC
FKGETQINDQLTGYGQWEYNIQANNTESSKNQSWTRLAFAGLKFADYGSFDYGRNYGVMY
CCCCCEECCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCEEECCCCCCCCCCCCEEE
DIEGWTDMLPEFGGDSYTNADNFMTGRANGVATYRNTDFFGLVNGLNFAVQYQGNNEGAS
EECCHHHHHHHHCCCCCCCCCCEEECCCCCEEEEECCCEEEEECCCEEEEEECCCCCCCC
NGQEGTNNGRDVRHENGDGWGFSTTYDLGMGFSAGAAYTSSDRTNDQVNHTAAGGDKADA
CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEECCCCCCCCCCCEEECCCCCCCC
WTAGLKYDANNIYLATMYSETRNMTPFGDSDYAVANKTQNFEVTAQYQFDFGLRPAVSFL
EECCEEECCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCEEEEEEEEECCCCHHHHHHH
MSKGRDLHAAGGADNPAGVDDKDLVKYADVGATYYFNKNMSTYVDYKINLLDEDDSFYAA
HHCCCEEEECCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCEEEEEEEEEEECCCCEEEE
NGISTDDIVALGLVYQF
CCCCHHHEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9642192 [H]