| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is yeaX [H]
Identifier: 187730389
GI number: 187730389
Start: 1874938
End: 1875903
Strand: Direct
Name: yeaX [H]
Synonym: SbBS512_E2063
Alternate gene names: 187730389
Gene position: 1874938-1875903 (Clockwise)
Preceding gene: 187731158
Following gene: 187734023
Centisome position: 40.62
GC content: 50.52
Gene sequence:
>966_bases ATGTCAGACTATCAAATGTTTGAAGTACAGGTGAGCCAGGTTGAACCCCTTACCGAACAGGTGAAACGCTTCACGCTGGT GGCAACCGATGGCAAACCGCTGCCTGCGTTCACCGGAGGAAGTCACGTCATTGTGCAGATGAGCGATGGTGATAACCAGT ACAGCAATGCGTATTCACTACTGAGTTCGCCGCATGACACCTCTTGTTATCAGATTGCCGTTCGGCTGGAGGAAAACTCG CGCGGCGGTTCCCGCTTTTTGCATCAGCAGGTAAAAGTGGGCAATCGGTTAACGATTTCAACGCCTAATAACCTGTTTGC GCTAATTCCCTCAGCCAGAAAGCATCTGTTTATCGCGGGCGGTATTGGTATCACCCCTTTCCTGTCGCACATGGCAGAGC TGCAACACAGCGACGTCGACTGGCAGCTACATTACTGCTCGCGAAATCCAGAAAGTTGCGCATTTCGTGATGAGCTAGTC CAGCATCCGCAGGCTGAGAAAGTTCACTTGCATCACTCATCAACCGGAACACGACTGGAATTAGCGCGATTATTGGCGGA TATCGAACCTGGCACACACGTTTATACCTGTGGTCCCGAGGCGCTAAATGAAGCGGTAAGAAGTGAAGCTGCGCGTCTGG ACATCGCCGCCGATACGCTGCACTTTGAGCAATTTGCTATCGAAGACAAAACCGGCGATGCCTTTACCCTGGTGCTTGCC TGTTCCGGAAAAGAGTTTGTGGTGCCGGAAGAGATGACTATTTTGCAGGTTATTGAAAATAATAAAGCCGCGAAAGTGGA ATGTTTATGTCGTGAAGGGGTATGCGGAACCTGCGAAACAGCAATACTGGAAGGTGAAGCTGACCATCGGGATCAGTATT TTAGCGATGAAGAGCGTGCCAGCCAGCAAAGTATGTTGATCTGTTGTTCGCGTGCGAAGGGTAAACGCCTGGTGTTGGAT TTGTAG
Upstream 100 bases:
>100_bases ATCGCCCATTTCCATAATCTGCTGGCGCAGGTGTTTAAGGACTAATGACATCGGCGGCGGTATTTTCCGCCGCTGGGCTG ATTTTTGATGGAGTACAGCA
Downstream 100 bases:
>100_bases TTTGCCAAAGCCGGATGTGGCGCTGAGCGCGCCCAGTCCGGCTTCGGAAGATTTTACTGCGGATATTCCTGCAATAAATT GTGTAATGCTTCCGCCATCA
Product: oxidoreductase, FAD/NAD-binding/iron-sulfur cluster binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 321; Mature: 320
Protein sequence:
>321_residues MSDYQMFEVQVSQVEPLTEQVKRFTLVATDGKPLPAFTGGSHVIVQMSDGDNQYSNAYSLLSSPHDTSCYQIAVRLEENS RGGSRFLHQQVKVGNRLTISTPNNLFALIPSARKHLFIAGGIGITPFLSHMAELQHSDVDWQLHYCSRNPESCAFRDELV QHPQAEKVHLHHSSTGTRLELARLLADIEPGTHVYTCGPEALNEAVRSEAARLDIAADTLHFEQFAIEDKTGDAFTLVLA CSGKEFVVPEEMTILQVIENNKAAKVECLCREGVCGTCETAILEGEADHRDQYFSDEERASQQSMLICCSRAKGKRLVLD L
Sequences:
>Translated_321_residues MSDYQMFEVQVSQVEPLTEQVKRFTLVATDGKPLPAFTGGSHVIVQMSDGDNQYSNAYSLLSSPHDTSCYQIAVRLEENS RGGSRFLHQQVKVGNRLTISTPNNLFALIPSARKHLFIAGGIGITPFLSHMAELQHSDVDWQLHYCSRNPESCAFRDELV QHPQAEKVHLHHSSTGTRLELARLLADIEPGTHVYTCGPEALNEAVRSEAARLDIAADTLHFEQFAIEDKTGDAFTLVLA CSGKEFVVPEEMTILQVIENNKAAKVECLCREGVCGTCETAILEGEADHRDQYFSDEERASQQSMLICCSRAKGKRLVLD L >Mature_320_residues SDYQMFEVQVSQVEPLTEQVKRFTLVATDGKPLPAFTGGSHVIVQMSDGDNQYSNAYSLLSSPHDTSCYQIAVRLEENSR GGSRFLHQQVKVGNRLTISTPNNLFALIPSARKHLFIAGGIGITPFLSHMAELQHSDVDWQLHYCSRNPESCAFRDELVQ HPQAEKVHLHHSSTGTRLELARLLADIEPGTHVYTCGPEALNEAVRSEAARLDIAADTLHFEQFAIEDKTGDAFTLVLAC SGKEFVVPEEMTILQVIENNKAAKVECLCREGVCGTCETAILEGEADHRDQYFSDEERASQQSMLICCSRAKGKRLVLDL
Specific function: Unknown
COG id: COG1018
COG function: function code C; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FAD-binding FR-type domain [H]
Homologues:
Organism=Escherichia coli, GI1788104, Length=321, Percent_Identity=99.0654205607477, Blast_Score=659, Evalue=0.0, Organism=Escherichia coli, GI1787098, Length=289, Percent_Identity=27.3356401384083, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1787658, Length=320, Percent_Identity=23.125, Blast_Score=70, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006058 - InterPro: IPR012675 - InterPro: IPR017927 - InterPro: IPR001041 - InterPro: IPR008333 - InterPro: IPR001433 - InterPro: IPR000951 - InterPro: IPR017938 [H]
Pfam domain/function: PF00970 FAD_binding_6; PF00111 Fer2; PF00175 NAD_binding_1 [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 35609; Mature: 35477
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 3.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDYQMFEVQVSQVEPLTEQVKRFTLVATDGKPLPAFTGGSHVIVQMSDGDNQYSNAYSL CCCCEEEEEEEHHCCHHHHHHHEEEEEEECCCCCCCCCCCCEEEEEECCCCCHHHHHHHH LSSPHDTSCYQIAVRLEENSRGGSRFLHQQVKVGNRLTISTPNNLFALIPSARKHLFIAG HCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCEEEEEC GIGITPFLSHMAELQHSDVDWQLHYCSRNPESCAFRDELVQHPQAEKVHLHHSSTGTRLE CCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEEEEECCCCCHHH LARLLADIEPGTHVYTCGPEALNEAVRSEAARLDIAADTLHFEQFAIEDKTGDAFTLVLA HHHHHHHCCCCCEEEECCHHHHHHHHHHHHHEEEEEHHHEEHHHEEEECCCCCEEEEEEE CSGKEFVVPEEMTILQVIENNKAAKVECLCREGVCGTCETAILEGEADHRDQYFSDEERA ECCCEEECCCCHHEEEEHHCCCCCEEEEEECCCCCCCCCCEEECCCCCCCCCCCCCHHHH SQQSMLICCSRAKGKRLVLDL HHHCEEEEECCCCCCEEEEEC >Mature Secondary Structure SDYQMFEVQVSQVEPLTEQVKRFTLVATDGKPLPAFTGGSHVIVQMSDGDNQYSNAYSL CCCEEEEEEEHHCCHHHHHHHEEEEEEECCCCCCCCCCCCEEEEEECCCCCHHHHHHHH LSSPHDTSCYQIAVRLEENSRGGSRFLHQQVKVGNRLTISTPNNLFALIPSARKHLFIAG HCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCEEEEEC GIGITPFLSHMAELQHSDVDWQLHYCSRNPESCAFRDELVQHPQAEKVHLHHSSTGTRLE CCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEEEEECCCCCHHH LARLLADIEPGTHVYTCGPEALNEAVRSEAARLDIAADTLHFEQFAIEDKTGDAFTLVLA HHHHHHHCCCCCEEEECCHHHHHHHHHHHHHEEEEEHHHEEHHHEEEECCCCCEEEEEEE CSGKEFVVPEEMTILQVIENNKAAKVECLCREGVCGTCETAILEGEADHRDQYFSDEERA ECCCEEECCCCHHEEEEHHCCCCCEEEEEECCCCCCCCCCEEECCCCCCCCCCCCCHHHH SQQSMLICCSRAKGKRLVLDL HHHCEEEEECCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: FMN. [C]
Metal ions: Fe [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]