Click here to switch to the map view.

The map label for this gene is ygaD [H]

Identifier: 187730362

GI number: 187730362

Start: 2968483

End: 2968980

Strand: Direct

Name: ygaD [H]

Synonym: SbBS512_E3177

Alternate gene names: 187730362

Gene position: 2968483-2968980 (Clockwise)

Preceding gene: 187733881

Following gene: 187730972

Centisome position: 64.31

GC content: 56.22

Gene sequence:

>498_bases
ATGACTGACAGTGAACTGATGCAGTTAAGTGAACAGGTTGGGCAGGCGCTGAAAGCCCGTGGCGCAACCGTAACAACTGC
CGAGTCTTGTACCGGTGGTTGGGTAGCGAAAGTGATTACCGATATTGCCGATAGCTCCGCCTGGTTTGAACGCGGATTTG
TCACCTACAGTAACGAAGCCAAAGCGCAGATGATCGGCGTACGCGAAGAGACGCTGGCGCAGCATGGCGCGGTGAGTGAA
CCCGTCGTGGTGGAAATGGTGATAGGCGCACTGAAAGCGGCTCGTGCTGATTATGCCGTGTCTATTAGTGGTATCGCCGG
GCCGGATGGCGGCAGTGAAGAGAAGCCTGTCGGCACCGTCTGGTTTGCTTTTGCCACTGCCCGCGGTGAAGGCATTACCC
GGCGGGAATGCTTCAGCGGCGACCGTGATGCGGTGCGTCGTCAGGCTACTGCGTATGCATTGCAGACCTTGTGGCAACAA
TTTCTACAAAACACTTGA

Upstream 100 bases:

>100_bases
TTTTTTCTGAATCCTCCTCGTAAAATTGCAACGCCAACACCATCTTCCTGACGAAAGTGCTATCTTGTCCGGCATAAATT
TTTGACTGACAGAGGTTGTG

Downstream 100 bases:

>100_bases
TACTGTATGAGCATACAGTATAATTACTTCAACAGAACATATTGACTATCCGGTATTACCCGGCATGACAGGAGTAAAAA
TGGCTATCGACGAAAACAAA

Product: competence damage-inducible protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 164

Protein sequence:

>165_residues
MTDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIADSSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSE
PVVVEMVIGALKAARADYAVSISGIAGPDGGSEEKPVGTVWFAFATARGEGITRRECFSGDRDAVRRQATAYALQTLWQQ
FLQNT

Sequences:

>Translated_165_residues
MTDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIADSSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSE
PVVVEMVIGALKAARADYAVSISGIAGPDGGSEEKPVGTVWFAFATARGEGITRRECFSGDRDAVRRQATAYALQTLWQQ
FLQNT
>Mature_164_residues
TDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIADSSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSEP
VVVEMVIGALKAARADYAVSISGIAGPDGGSEEKPVGTVWFAFATARGEGITRRECFSGDRDAVRRQATAYALQTLWQQF
LQNT

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=165, Percent_Identity=98.7878787878788, Blast_Score=330, Evalue=3e-92,
Organism=Escherichia coli, GI1787818, Length=146, Percent_Identity=37.6712328767123, Blast_Score=103, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136 [H]

Pfam domain/function: PF02464 CinA [H]

EC number: NA

Molecular weight: Translated: 17668; Mature: 17537

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIADSSAWFERGFVTYSNEA
CCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCHHHHHCCCEEECCCC
KAQMIGVREETLAQHGAVSEPVVVEMVIGALKAARADYAVSISGIAGPDGGSEEKPVGTV
HHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHH
WFAFATARGEGITRRECFSGDRDAVRRQATAYALQTLWQQFLQNT
HHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIADSSAWFERGFVTYSNEA
CHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCHHHHHCCCEEECCCC
KAQMIGVREETLAQHGAVSEPVVVEMVIGALKAARADYAVSISGIAGPDGGSEEKPVGTV
HHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHH
WFAFATARGEGITRRECFSGDRDAVRRQATAYALQTLWQQFLQNT
HHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]