Click here to switch to the map view.

The map label for this gene is ykfJ [H]

Identifier: 187730289

GI number: 187730289

Start: 237916

End: 238482

Strand: Direct

Name: ykfJ [H]

Synonym: SbBS512_E0231

Alternate gene names: 187730289

Gene position: 237916-238482 (Clockwise)

Preceding gene: 187733982

Following gene: 187732116

Centisome position: 5.15

GC content: 49.91

Gene sequence:

>567_bases
ATGGGCAATTATATTCGTCCCTTATCCGATGCGGTATTTACCATCGCATCTGATGACCAGTGGATCGAGAGTTTAGCGAT
CCAACAATTACACACCACGGCAAATTTACCCAACATGCAGCGCGTAGTGGGGATGCCAGATTTACATCCCGGACGCGGCT
ATCCGATTGGCGCAGCGTTCTTCTCTGTTGGTCATTTTTATCCGGCACTGGTCGGCAATGATATCGGCTGCGGTATGGCG
CTATGGCAAACAGATATTCTCGCTCGCAAATACAACGCCGATAAGTTTGAAAAGCGATTATCAGATCTGGATGACGTTGC
TGAAGAAAGCTGGCTGGAGGAAAACCTGCCGTCAGCATTTGCACAGCATCCTTGGTGCAGCTCGCTTGGCTCTATCGGTG
GCGGCAATCATTTCGCTGAACTGCAACAAGTTGATCAAATCATCAACGCTGAACTGTTTGCACTAGCAGGTCTGGATGCA
CAACATCTGCAACTGTTGGTTCATAGCGGCTCGCGGGGGGTGCCCCTATTAAGTTGTCAAGCATGTTATGACCCCTGCGG
GGTATAA

Upstream 100 bases:

>100_bases
ATTCGTCTGCTATTTCCTGATTTTTTAATTGTTACTCTCAATAATTCAAGTCGCAACACATGCAACTTGAAGTATGACGA
GTCTATTTACGGAATGGTAT

Downstream 100 bases:

>100_bases
AAAGTCCCGTCGCGCATCATGGCGAACAGAACGTCGCAGCGTCGTCTCGCCAGGGCGATAAGCGCCTGATTGTGTCGTTT
TCCCTGACTCATTTTGCGGG

Product: putative release factor H-coupled RctB family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MGNYIRPLSDAVFTIASDDQWIESLAIQQLHTTANLPNMQRVVGMPDLHPGRGYPIGAAFFSVGHFYPALVGNDIGCGMA
LWQTDILARKYNADKFEKRLSDLDDVAEESWLEENLPSAFAQHPWCSSLGSIGGGNHFAELQQVDQIINAELFALAGLDA
QHLQLLVHSGSRGVPLLSCQACYDPCGV

Sequences:

>Translated_188_residues
MGNYIRPLSDAVFTIASDDQWIESLAIQQLHTTANLPNMQRVVGMPDLHPGRGYPIGAAFFSVGHFYPALVGNDIGCGMA
LWQTDILARKYNADKFEKRLSDLDDVAEESWLEENLPSAFAQHPWCSSLGSIGGGNHFAELQQVDQIINAELFALAGLDA
QHLQLLVHSGSRGVPLLSCQACYDPCGV
>Mature_187_residues
GNYIRPLSDAVFTIASDDQWIESLAIQQLHTTANLPNMQRVVGMPDLHPGRGYPIGAAFFSVGHFYPALVGNDIGCGMAL
WQTDILARKYNADKFEKRLSDLDDVAEESWLEENLPSAFAQHPWCSSLGSIGGGNHFAELQQVDQIINAELFALAGLDAQ
HLQLLVHSGSRGVPLLSCQACYDPCGV

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 20498; Mature: 20367

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNYIRPLSDAVFTIASDDQWIESLAIQQLHTTANLPNMQRVVGMPDLHPGRGYPIGAAF
CCCCCCCHHHHEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHH
FSVGHFYPALVGNDIGCGMALWQTDILARKYNADKFEKRLSDLDDVAEESWLEENLPSAF
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQHPWCSSLGSIGGGNHFAELQQVDQIINAELFALAGLDAQHLQLLVHSGSRGVPLLSCQ
HCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEHH
ACYDPCGV
HHCCCCCC
>Mature Secondary Structure 
GNYIRPLSDAVFTIASDDQWIESLAIQQLHTTANLPNMQRVVGMPDLHPGRGYPIGAAF
CCCCCCHHHHEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHH
FSVGHFYPALVGNDIGCGMALWQTDILARKYNADKFEKRLSDLDDVAEESWLEENLPSAF
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQHPWCSSLGSIGGGNHFAELQQVDQIINAELFALAGLDAQHLQLLVHSGSRGVPLLSCQ
HCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEHH
ACYDPCGV
HHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]