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The map label for this gene is ybgJ [H]

Identifier: 187730266

GI number: 187730266

Start: 598902

End: 599558

Strand: Direct

Name: ybgJ [H]

Synonym: SbBS512_E0628

Alternate gene names: 187730266

Gene position: 598902-599558 (Clockwise)

Preceding gene: 187733800

Following gene: 187732878

Centisome position: 12.97

GC content: 57.53

Gene sequence:

>657_bases
GTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCA
GAAACGGATCTGGCGACTGGCGCAGCGTCTGGTGGATATACCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCA
CGGTGATTTTGCGTAATCCTGAGTCGCTGGCGCTGGATGCCATAGAGCGTTTGCAACGCTGGTGGGAGGAGAGCGAGGCC
CTGGAACCTGAGTCTCGCTTTATTGAAATTCCGGTGGTTTACGGTGGTGCAGGCGGACCGGATTTGGCGGTGGTCGCGGC
GCATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAAC
CGGGCTTCCCGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTGCTCGTTCCGGCA
GGTTCTGTCGGGATCGGCGGGCCGCAGACTGGTGTTTATCCGCTGGCAACGCCGGGTGGCTGGCAGTTGATTGGTCATAC
CTCACTCAGCCTGTTTGATCCGGCGCGTGACGAACCCATCTTATTACGTCCGGGAGACAGCGTGCGCTTTGTACCGCAGA
AGGAGGGAGTATGCTGA

Upstream 100 bases:

>100_bases
ATTCGCGCATTGAGCGAGTGGCTGAATGAAAATACCGATCTTGATGTGACCTTTATTGATATTCCTAATCCTGCATAACG
AATAATCAGAGGGATCGAAA

Downstream 100 bases:

>100_bases
AGATTATTCGTGCGGGCATGTATACCACTGTGCAGGATGGCGGTCGTCACGGTTTTCGCCAGTCGGGTATCAGCCACTGC
GGCGCACTGGATATGCCTGC

Product: allophanate hydrolase subunit 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDIPNVVEAIPGMNNITVILRNPESLALDAIERLQRWWEESEA
LEPESRFIEIPVVYGGAGGPDLAVVAAHCGLSEKQVVELHSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPA
GSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQKEGVC

Sequences:

>Translated_218_residues
MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDIPNVVEAIPGMNNITVILRNPESLALDAIERLQRWWEESEA
LEPESRFIEIPVVYGGAGGPDLAVVAAHCGLSEKQVVELHSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPA
GSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQKEGVC
>Mature_218_residues
MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDIPNVVEAIPGMNNITVILRNPESLALDAIERLQRWWEESEA
LEPESRFIEIPVVYGGAGGPDLAVVAAHCGLSEKQVVELHSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPA
GSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQKEGVC

Specific function: Unknown

COG id: COG2049

COG function: function code E; Allophanate hydrolase subunit 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786929, Length=218, Percent_Identity=99.5412844036697, Blast_Score=436, Evalue=1e-124,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003833
- InterPro:   IPR020899
- InterPro:   IPR010016
- InterPro:   IPR002130 [H]

Pfam domain/function: PF02682 AHS1 [H]

EC number: NA

Molecular weight: Translated: 23929; Mature: 23929

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDIPNVVEAIPGMNNITVILRNP
CCCCEEEEEECEEEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCEEEEEECC
ESLALDAIERLQRWWEESEALEPESRFIEIPVVYGGAGGPDLAVVAAHCGLSEKQVVELH
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHH
SSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPAGSVGIGGPQTGVYPLATPGG
HHHEEEEEEEECCCCCCCCCCCHHHHCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCC
WQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQKEGVC
EEEEECCEEEEECCCCCCCEEEECCCCEEEECCCCCCC
>Mature Secondary Structure
MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDIPNVVEAIPGMNNITVILRNP
CCCCEEEEEECEEEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCEEEEEECC
ESLALDAIERLQRWWEESEALEPESRFIEIPVVYGGAGGPDLAVVAAHCGLSEKQVVELH
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHH
SSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPAGSVGIGGPQTGVYPLATPGG
HHHEEEEEEEECCCCCCCCCCCHHHHCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCC
WQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQKEGVC
EEEEECCEEEEECCCCCCCEEEECCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]