Definition Shigella boydii CDC 3083-94 chromosome, complete genome.
Accession NC_010658
Length 4,615,997

Click here to switch to the map view.

The map label for this gene is ybhG [H]

Identifier: 187730241

GI number: 187730241

Start: 2359619

End: 2360614

Strand: Direct

Name: ybhG [H]

Synonym: SbBS512_E2557

Alternate gene names: 187730241

Gene position: 2359619-2360614 (Clockwise)

Preceding gene: 187730699

Following gene: 187730303

Centisome position: 51.12

GC content: 57.33

Gene sequence:

>996_bases
ATGAAAAAACCTGTCGTGATCGGACTGGCGGTAGTGGTACTTGCCGCCGTGGTTGCCGGAGGCTACTGGTGGTATCAAAG
CCGCCAGGATAACGGCCTGAAGCTGTATGGCAACGTGGATATTCGTACGGTGAATCTTAGTTTCCGTGTTGGGGGGCGCG
TTGAATCGCTGGCGGTGGACGAAGGTGATGCGATCAAAGCGGGCCAGGTGCTGGGCGAACTGGATCACAAGCCGTATGAG
ATTGCCCTGATGCAGGTGAAAGCGGGCGTCTCGGTGGCACAGGCGCAGTATGACCTGATGCTTGCCGGGTATCGCGATGA
AGAAATCGCTCAGGCCGCCGCAGCGGTGAAACAGGCGCAAGCCGCCTATGACTATGCGCAGAACTTCTATAACCGCCAGC
AAGGACTGTGGAAAAGCCGCACCATTTCGGCAAATGACCTGGAAAATGCCCGCTCCTCGCGCGACCAGGCACAGGCAACG
CTGAAATCAGCACAGGATAAATTGCGTCAGTACCGTTCCGGTAACCGTGAACAGGACATCGCTCAGGCGAAAGCCAGCCT
CGAACAGGCGCAGGCGCAACTGGCGCAGGCGGAGCTGAATTTACAGGACTCAACGTTGATAGCACCGTCTGATGGCACAC
TGTTAACGCGCGCGGTGGAGCCAGGCACGGTTCTCAATGAAGGTGGCACGGTGTTTACCGTTTCACTAACGCGTCCGGTG
TGGGTGCGCGCTTATGTTGATGAACGGAATCTTGACCAGGCCCAGCCGGGGCGCAAAGTGCTGCTTTATACCGATGGTCG
CCCGGACAAGCCGTATCACGGGCAGATTGGTTTCGTTTCGCCGACTGCTGAATTTACCCCGAAAACCGTCGAAACACCGG
ATCTGCGTACCGACCTCGTCTATCGCCTGCGTATTGTGGTGACCGACGCCGATGATGCGTTACGCCAGGGAATGCCGGTG
ACGGTGCAATTCGGTAACGAGGCAGGACATGAATGA

Upstream 100 bases:

>100_bases
GGACCGCGTTCGATGAAGAAAAGACCGAACTGATCAACCAGACGGTGACCTGTCATATCGACCTGATTTTGCAAGGATTA
TCGCAAAGGAGTTTGTAGTG

Downstream 100 bases:

>100_bases
TGCCGTTATCACGCTGAACGGCCTGGAAAAACGCTTTCCGGGCATGGACAAGCCCGCCGTCGCGCCGCTCGATTGTACCA
TTCACGCCGGTTATGTGACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MKKPVVIGLAVVVLAAVVAGGYWWYQSRQDNGLKLYGNVDIRTVNLSFRVGGRVESLAVDEGDAIKAGQVLGELDHKPYE
IALMQVKAGVSVAQAQYDLMLAGYRDEEIAQAAAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQAT
LKSAQDKLRQYRSGNREQDIAQAKASLEQAQAQLAQAELNLQDSTLIAPSDGTLLTRAVEPGTVLNEGGTVFTVSLTRPV
WVRAYVDERNLDQAQPGRKVLLYTDGRPDKPYHGQIGFVSPTAEFTPKTVETPDLRTDLVYRLRIVVTDADDALRQGMPV
TVQFGNEAGHE

Sequences:

>Translated_331_residues
MKKPVVIGLAVVVLAAVVAGGYWWYQSRQDNGLKLYGNVDIRTVNLSFRVGGRVESLAVDEGDAIKAGQVLGELDHKPYE
IALMQVKAGVSVAQAQYDLMLAGYRDEEIAQAAAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQAT
LKSAQDKLRQYRSGNREQDIAQAKASLEQAQAQLAQAELNLQDSTLIAPSDGTLLTRAVEPGTVLNEGGTVFTVSLTRPV
WVRAYVDERNLDQAQPGRKVLLYTDGRPDKPYHGQIGFVSPTAEFTPKTVETPDLRTDLVYRLRIVVTDADDALRQGMPV
TVQFGNEAGHE
>Mature_331_residues
MKKPVVIGLAVVVLAAVVAGGYWWYQSRQDNGLKLYGNVDIRTVNLSFRVGGRVESLAVDEGDAIKAGQVLGELDHKPYE
IALMQVKAGVSVAQAQYDLMLAGYRDEEIAQAAAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQAT
LKSAQDKLRQYRSGNREQDIAQAKASLEQAQAQLAQAELNLQDSTLIAPSDGTLLTRAVEPGTVLNEGGTVFTVSLTRPV
WVRAYVDERNLDQAQPGRKVLLYTDGRPDKPYHGQIGFVSPTAEFTPKTVETPDLRTDLVYRLRIVVTDADDALRQGMPV
TVQFGNEAGHE

Specific function: Unknown

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0194 family [H]

Homologues:

Organism=Escherichia coli, GI1787013, Length=331, Percent_Identity=98.7915407854985, Blast_Score=663, Evalue=0.0,
Organism=Escherichia coli, GI1789900, Length=308, Percent_Identity=30.1948051948052, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI87081796, Length=292, Percent_Identity=26.7123287671233, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1790519, Length=245, Percent_Identity=26.530612244898, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789041, Length=262, Percent_Identity=25.1908396946565, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87081951, Length=269, Percent_Identity=23.7918215613383, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143
- InterPro:   IPR022936 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 36340; Mature: 36340

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKPVVIGLAVVVLAAVVAGGYWWYQSRQDNGLKLYGNVDIRTVNLSFRVGGRVESLAVD
CCCCEEHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEEEEEEEEEEEEECCCEEEEEEC
EGDAIKAGQVLGELDHKPYEIALMQVKAGVSVAQAQYDLMLAGYRDEEIAQAAAAVKQAQ
CCCCCHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHEEEEEECCCHHHHHHHHHHHHHHH
AAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQATLKSAQDKLRQYRSGNREQDI
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
AQAKASLEQAQAQLAQAELNLQDSTLIAPSDGTLLTRAVEPGTVLNEGGTVFTVSLTRPV
HHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEEECCCCCEEECCCEEEEEEECCCE
WVRAYVDERNLDQAQPGRKVLLYTDGRPDKPYHGQIGFVSPTAEFTPKTVETPDLRTDLV
EEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHCEE
YRLRIVVTDADDALRQGMPVTVQFGNEAGHE
EEEEEEEECCHHHHHCCCCEEEEECCCCCCC
>Mature Secondary Structure
MKKPVVIGLAVVVLAAVVAGGYWWYQSRQDNGLKLYGNVDIRTVNLSFRVGGRVESLAVD
CCCCEEHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEEEEEEEEEEEEECCCEEEEEEC
EGDAIKAGQVLGELDHKPYEIALMQVKAGVSVAQAQYDLMLAGYRDEEIAQAAAAVKQAQ
CCCCCHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHEEEEEECCCHHHHHHHHHHHHHHH
AAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQATLKSAQDKLRQYRSGNREQDI
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
AQAKASLEQAQAQLAQAELNLQDSTLIAPSDGTLLTRAVEPGTVLNEGGTVFTVSLTRPV
HHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEEECCCCCEEECCCEEEEEEECCCE
WVRAYVDERNLDQAQPGRKVLLYTDGRPDKPYHGQIGFVSPTAEFTPKTVETPDLRTDLV
EEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHCEE
YRLRIVVTDADDALRQGMPVTVQFGNEAGHE
EEEEEEEECCHHHHHCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA