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The map label for this gene is ymbA [H]

Identifier: 187730231

GI number: 187730231

Start: 2153834

End: 2154397

Strand: Reverse

Name: ymbA [H]

Synonym: SbBS512_E2365

Alternate gene names: 187730231

Gene position: 2154397-2153834 (Counterclockwise)

Preceding gene: 187731372

Following gene: 187730713

Centisome position: 46.67

GC content: 51.95

Gene sequence:

>564_bases
ATGAAAAAGTGGCTAGTGACGATTGCAGCACTGTGGCTGGCCGGATGCAGCTCCGGCGAAATTAATAAAAACTATTACCA
GTTACCTGTGGTGCAGAGCGGTACACAAAGTACCGCCAGCCAGGGCAATCGTCTGTTATGGGTAGAGCAGGTCACTGTTC
CTGACTATCTGGCGGGGAATGGTGTGGTTTATCAAACCAGTGATGTGAAGTATGTGATTGCCAACAACAACTTGTGGGCC
AGCCCGTTGGATCAACAGTTGCGCAACACCCTGGTTGCCAACCTGAGTACGCAACTGCCCGGCTGGGTGGTTGCCTCCCA
GCCTCTGGGAAGCGTCCAGGACACGCTCAATGTTACCGTAACGGAGTTTAACGGTCGCTATGATGGCAAGGTCATTGTCA
GTGGTGAGTGGCTGTTGAACCACCAGGGACAACTGATCAAACGTCCGTTCCGTCTGGAAGGAGTGCAAACTCAGGATGGT
TACGATGAGATGGTTAAAGTGCTGGCCGGTGTCTGGAGTCAGGAAGCCGCTTCTATTGCACAAGAGATAAAGCGTCTACC
TTAA

Upstream 100 bases:

>100_bases
GAGAACTGCAACCGGTGCTGAAAACGCTCAATGAGAAGAGTAACGCGCTGGTATTTGAAGCGAAGGACAAAAAAGATCCA
GAGCCGAAGAGGGCGAAACA

Downstream 100 bases:

>100_bases
TTATAAAGATTTGTAAGTATAACCGTCTCCGGTATGTTGCCTGAGGCGGTTTTTTTGTTTCTAACGTGCGGAAAAATTTG
TTCCTCTTCACATTTTTTGT

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNRLLWVEQVTVPDYLAGNGVVYQTSDVKYVIANNNLWA
SPLDQQLRNTLVANLSTQLPGWVVASQPLGSVQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDG
YDEMVKVLAGVWSQEAASIAQEIKRLP

Sequences:

>Translated_187_residues
MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNRLLWVEQVTVPDYLAGNGVVYQTSDVKYVIANNNLWA
SPLDQQLRNTLVANLSTQLPGWVVASQPLGSVQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDG
YDEMVKVLAGVWSQEAASIAQEIKRLP
>Mature_187_residues
MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNRLLWVEQVTVPDYLAGNGVVYQTSDVKYVIANNNLWA
SPLDQQLRNTLVANLSTQLPGWVVASQPLGSVQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDG
YDEMVKVLAGVWSQEAASIAQEIKRLP

Specific function: Unknown

COG id: COG3009

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693109, Length=187, Percent_Identity=99.4652406417112, Blast_Score=376, Evalue=1e-106,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005586 [H]

Pfam domain/function: PF03886 DUF330 [H]

EC number: NA

Molecular weight: Translated: 20663; Mature: 20663

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNRLLWVEQVTVPDYLAGN
CCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHCCCEEEEEEEECCCCEECCC
GVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGWVVASQPLGSVQDTLNVTV
CEEEEECCEEEEEECCCEECCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEE
TEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDGYDEMVKVLAGVWSQEAASIA
EEECCCCCCEEEEECCEEECCCCHHHCCCEEECCCCCCCCHHHHHHHHHHCCCHHHHHHH
QEIKRLP
HHHHCCC
>Mature Secondary Structure
MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNRLLWVEQVTVPDYLAGN
CCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHCCCEEEEEEEECCCCEECCC
GVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGWVVASQPLGSVQDTLNVTV
CEEEEECCEEEEEECCCEECCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEE
TEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDGYDEMVKVLAGVWSQEAASIA
EEECCCCCCEEEEECCEEECCCCHHHCCCEEECCCCCCCCHHHHHHHHHHCCCHHHHHHH
QEIKRLP
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]