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The map label for this gene is ybiR [H]

Identifier: 186477781

GI number: 186477781

Start: 3408705

End: 3409853

Strand: Reverse

Name: ybiR [H]

Synonym: Bphy_3035

Alternate gene names: 186477781

Gene position: 3409853-3408705 (Counterclockwise)

Preceding gene: 186477782

Following gene: 186477780

Centisome position: 98.01

GC content: 58.92

Gene sequence:

>1149_bases
ATGCCGGCCGCCGAGCGAGTCCTAAAAACCAACCGAAACCTGCTGAGCGCGATCATTCACTATGTAGCGACAGAGCCGGT
GCTGACCGTGCTCGTCGTTGCACTAATCGCGCTGCAGGTTTTTCATCCGCGCCCATTCGCATCTCTGCCTGCGCTGGTTG
ACTGGCAGACAGTCATGACGCTCGCCGGGCTTCTGATTCTGACGAAGGCTGTCGAATATTCAGGATTCCTGATGTGGCTT
GCGCATCGAGTCGTCCATCGTATTCGGTCGCAGCGGGCGCTGGCCTATTTGCTCATCGCGCTCGCCGCTGCGCTGTCGAC
GGTGCTGACCAACGATGTTGCGTTGTTCGTCGTCGTGCCGCTTGCGTTGTCGCTGAACGAGTTGACGCCCCTGCCGCTTA
AGCGGCTCGTCATTTTCATCGCAATTGCCGTCAATGCCGGCTCGATCCTCACGCCGTTAGGCAATCCGCAGAATCTGTTT
CTCTGGCAGACGAGCGGCGTGTCATTTGGCGGATTCGTGCTCGCGCTCGCGCCGTTGTGTGTTGTGTTGATGGCGATGCT
GTACGCGGTGGCGACGGTGTCGTTCAAGCGCATTCCGCTGGATCTGTCGAAGGATACCGAACCGCATCCTGTCGATCGGC
CGTTGCTGGGTGTTGCAGTCCTGCTGTTCACAGCATTTGTCCTGCTCGCTGATGCTCACCGCGCGGGCATTGGGCTGATT
GGCGTCGCTCTCGGATTCGTTTTTTGGCGCCCGCGAATTGTTCTGAAGATCGACTGGCTTCTGCTGCTGATCTTCGTGTT
CATGTTCGTCGTGTTAAGAAGTGTCGCGGCGTTGCCGTGGGTGCACGGCGCAATCGGACAGTTGCACCTCGTGACGCCAC
TGCGCGCCTATGCTGCGGGCGCAGTGCTATCGCAGTTCATCAGTAATGTTCCCGCAGCCATCATGCTGGCCGAGTTCTCC
AAAGACTGGCGAGCACTAGCCTTCGGCGTCAGCGTCGGCGGATTCGGATTCGCGATCGGTTCGCTCGCGAACCTGATTGC
AATGAGGCTTTCAGGAGAGCGCGGCATGTGGGCGCAGTTTCACCTGTTTTCGATCCCGTTTTGGGTCGTCAGCGGCCTCG
CCGGCGCGTGGTTGCTGTTGCATTTTTGA

Upstream 100 bases:

>100_bases
GCGAGGACAGGTGCTGGTCGATTTCGGCGACCTCGACGCGCTCGAAGGTATTCTCGCCCGTTTGCGTGGCAACGCCACGG
CTGCGTAAATAGCCATTCCA

Downstream 100 bases:

>100_bases
CACTTGTGCAGACGGGGAAAATGCGCTTCATAGTGCGTCGCCATGGGACAGTACGGCACCCATTTCCCCGTCTCCCGCGA
CCGCCTTACATTTCTCGTCC

Product: citrate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MPAAERVLKTNRNLLSAIIHYVATEPVLTVLVVALIALQVFHPRPFASLPALVDWQTVMTLAGLLILTKAVEYSGFLMWL
AHRVVHRIRSQRALAYLLIALAAALSTVLTNDVALFVVVPLALSLNELTPLPLKRLVIFIAIAVNAGSILTPLGNPQNLF
LWQTSGVSFGGFVLALAPLCVVLMAMLYAVATVSFKRIPLDLSKDTEPHPVDRPLLGVAVLLFTAFVLLADAHRAGIGLI
GVALGFVFWRPRIVLKIDWLLLLIFVFMFVVLRSVAALPWVHGAIGQLHLVTPLRAYAAGAVLSQFISNVPAAIMLAEFS
KDWRALAFGVSVGGFGFAIGSLANLIAMRLSGERGMWAQFHLFSIPFWVVSGLAGAWLLLHF

Sequences:

>Translated_382_residues
MPAAERVLKTNRNLLSAIIHYVATEPVLTVLVVALIALQVFHPRPFASLPALVDWQTVMTLAGLLILTKAVEYSGFLMWL
AHRVVHRIRSQRALAYLLIALAAALSTVLTNDVALFVVVPLALSLNELTPLPLKRLVIFIAIAVNAGSILTPLGNPQNLF
LWQTSGVSFGGFVLALAPLCVVLMAMLYAVATVSFKRIPLDLSKDTEPHPVDRPLLGVAVLLFTAFVLLADAHRAGIGLI
GVALGFVFWRPRIVLKIDWLLLLIFVFMFVVLRSVAALPWVHGAIGQLHLVTPLRAYAAGAVLSQFISNVPAAIMLAEFS
KDWRALAFGVSVGGFGFAIGSLANLIAMRLSGERGMWAQFHLFSIPFWVVSGLAGAWLLLHF
>Mature_381_residues
PAAERVLKTNRNLLSAIIHYVATEPVLTVLVVALIALQVFHPRPFASLPALVDWQTVMTLAGLLILTKAVEYSGFLMWLA
HRVVHRIRSQRALAYLLIALAAALSTVLTNDVALFVVVPLALSLNELTPLPLKRLVIFIAIAVNAGSILTPLGNPQNLFL
WQTSGVSFGGFVLALAPLCVVLMAMLYAVATVSFKRIPLDLSKDTEPHPVDRPLLGVAVLLFTAFVLLADAHRAGIGLIG
VALGFVFWRPRIVLKIDWLLLLIFVFMFVVLRSVAALPWVHGAIGQLHLVTPLRAYAAGAVLSQFISNVPAAIMLAEFSK
DWRALAFGVSVGGFGFAIGSLANLIAMRLSGERGMWAQFHLFSIPFWVVSGLAGAWLLLHF

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Escherichia coli, GI1787039, Length=349, Percent_Identity=42.6934097421203, Blast_Score=242, Evalue=4e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 41470; Mature: 41339

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAAERVLKTNRNLLSAIIHYVATEPVLTVLVVALIALQVFHPRPFASLPALVDWQTVMT
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
LAGLLILTKAVEYSGFLMWLAHRVVHRIRSQRALAYLLIALAAALSTVLTNDVALFVVVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALSLNELTPLPLKRLVIFIAIAVNAGSILTPLGNPQNLFLWQTSGVSFGGFVLALAPLC
HHHHHCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCEEEEEEECCCCHHHHHHHHHHHH
VVLMAMLYAVATVSFKRIPLDLSKDTEPHPVDRPLLGVAVLLFTAFVLLADAHRAGIGLI
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHH
GVALGFVFWRPRIVLKIDWLLLLIFVFMFVVLRSVAALPWVHGAIGQLHLVTPLRAYAAG
HHHHHHHHHCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHH
AVLSQFISNVPAAIMLAEFSKDWRALAFGVSVGGFGFAIGSLANLIAMRLSGERGMWAQF
HHHHHHHHCCCHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEH
HLFSIPFWVVSGLAGAWLLLHF
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PAAERVLKTNRNLLSAIIHYVATEPVLTVLVVALIALQVFHPRPFASLPALVDWQTVMT
CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
LAGLLILTKAVEYSGFLMWLAHRVVHRIRSQRALAYLLIALAAALSTVLTNDVALFVVVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALSLNELTPLPLKRLVIFIAIAVNAGSILTPLGNPQNLFLWQTSGVSFGGFVLALAPLC
HHHHHCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCEEEEEEECCCCHHHHHHHHHHHH
VVLMAMLYAVATVSFKRIPLDLSKDTEPHPVDRPLLGVAVLLFTAFVLLADAHRAGIGLI
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHH
GVALGFVFWRPRIVLKIDWLLLLIFVFMFVVLRSVAALPWVHGAIGQLHLVTPLRAYAAG
HHHHHHHHHCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHH
AVLSQFISNVPAAIMLAEFSKDWRALAFGVSVGGFGFAIGSLANLIAMRLSGERGMWAQF
HHHHHHHHCCCHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEH
HLFSIPFWVVSGLAGAWLLLHF
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]