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The map label for this gene is flhC [H]

Identifier: 186477724

GI number: 186477724

Start: 3336606

End: 3337217

Strand: Reverse

Name: flhC [H]

Synonym: Bphy_2978

Alternate gene names: 186477724

Gene position: 3337217-3336606 (Counterclockwise)

Preceding gene: 186477725

Following gene: 186477723

Centisome position: 95.92

GC content: 61.44

Gene sequence:

>612_bases
ATGGCACAAAAAAGCGTGGTGCTCGAAGTCAGGGAAATCACCCTGGCCATTGAACTGATCGAACTCGGCGCACGTCTGCA
ACTGCTCGAAGCGGAGACGACGCTGTCGCGCGACCGGCTGATCAAGCTGTACAAGGAAGTCAAGGGCGTGTCGCCGCCCA
AGGGCATGCTGCCGTTTTCGACCGACTGGTTCATGACGTGGCAGCCGAACATTCACTCGTCGCTGTTCTACAACATCTAC
CGGTTCATGTCGGGACTGGGCCGCTGCGAGACGATCCAGTCGATCGTCAAGTCGTACCGCCTGTATCTCGAACACGTGGG
AATGCACCATGACGAGCCAGCGCTGAGCCTGACGCGCGCATGGACGCTGGTGCGTTTCTTCGACTCCGGCATGCTGCAGA
TGACGGCATGCACGCGCTGCCGCGGACATTTCGTCGCACATGCGCACGATCCGCAGCACAACTTCGTATGCGGATTGTGT
GCACCGCCGTCGCGCGCAGGTAAGACCCGGAAAGCCGTCGACGCCCGCTGCGACGAGCCGAAGGTGCCTTTCGGCGCGCC
GCTCGACGACGCGCTGGAGGCCTTATCCGACGGTGCTGTCACATCCGTCTGA

Upstream 100 bases:

>100_bases
CCGCGCCCGGACCAAGCCACCCTACGCGCGCCGGCGACGGCGCTTTTACCGTTTCTCGCCCGCGCGGCGCGAACGGCAAC
GGACGCGGGAAGCGAGGCGG

Downstream 100 bases:

>100_bases
CGCGTCGCCCGTAGCCGGGCTCCGCGGGCTTCGCCGCTTGCGCCGGTCCACTCTGGTTAACACCGCCCTCATCGGGCTCT
CATTCCGCCAAAGTTTTCCG

Product: transcriptional activator FlhC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MAQKSVVLEVREITLAIELIELGARLQLLEAETTLSRDRLIKLYKEVKGVSPPKGMLPFSTDWFMTWQPNIHSSLFYNIY
RFMSGLGRCETIQSIVKSYRLYLEHVGMHHDEPALSLTRAWTLVRFFDSGMLQMTACTRCRGHFVAHAHDPQHNFVCGLC
APPSRAGKTRKAVDARCDEPKVPFGAPLDDALEALSDGAVTSV

Sequences:

>Translated_203_residues
MAQKSVVLEVREITLAIELIELGARLQLLEAETTLSRDRLIKLYKEVKGVSPPKGMLPFSTDWFMTWQPNIHSSLFYNIY
RFMSGLGRCETIQSIVKSYRLYLEHVGMHHDEPALSLTRAWTLVRFFDSGMLQMTACTRCRGHFVAHAHDPQHNFVCGLC
APPSRAGKTRKAVDARCDEPKVPFGAPLDDALEALSDGAVTSV
>Mature_202_residues
AQKSVVLEVREITLAIELIELGARLQLLEAETTLSRDRLIKLYKEVKGVSPPKGMLPFSTDWFMTWQPNIHSSLFYNIYR
FMSGLGRCETIQSIVKSYRLYLEHVGMHHDEPALSLTRAWTLVRFFDSGMLQMTACTRCRGHFVAHAHDPQHNFVCGLCA
PPSRAGKTRKAVDARCDEPKVPFGAPLDDALEALSDGAVTSV

Specific function: Transcriptional activator. Together with flhD it acts as a compound sigma factor that activates class 2 flagellar genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flhC family [H]

Homologues:

Organism=Escherichia coli, GI1788201, Length=171, Percent_Identity=59.0643274853801, Blast_Score=228, Evalue=3e-61,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007944
- ProDom:   PD016592 [H]

Pfam domain/function: PF05280 FlhC [H]

EC number: NA

Molecular weight: Translated: 22793; Mature: 22661

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQKSVVLEVREITLAIELIELGARLQLLEAETTLSRDRLIKLYKEVKGVSPPKGMLPFS
CCCCHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TDWFMTWQPNIHSSLFYNIYRFMSGLGRCETIQSIVKSYRLYLEHVGMHHDEPALSLTRA
CCEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
WTLVRFFDSGMLQMTACTRCRGHFVAHAHDPQHNFVCGLCAPPSRAGKTRKAVDARCDEP
HHHHHHHHCCHHHHHHHHHHHCCEEEECCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCC
KVPFGAPLDDALEALSDGAVTSV
CCCCCCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AQKSVVLEVREITLAIELIELGARLQLLEAETTLSRDRLIKLYKEVKGVSPPKGMLPFS
CCCHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TDWFMTWQPNIHSSLFYNIYRFMSGLGRCETIQSIVKSYRLYLEHVGMHHDEPALSLTRA
CCEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
WTLVRFFDSGMLQMTACTRCRGHFVAHAHDPQHNFVCGLCAPPSRAGKTRKAVDARCDEP
HHHHHHHHCCHHHHHHHHHHHCCEEEECCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCC
KVPFGAPLDDALEALSDGAVTSV
CCCCCCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9287017 [H]