| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is maeB [H]
Identifier: 186477617
GI number: 186477617
Start: 3222188
End: 3224473
Strand: Reverse
Name: maeB [H]
Synonym: Bphy_2869
Alternate gene names: 186477617
Gene position: 3224473-3222188 (Counterclockwise)
Preceding gene: 186477618
Following gene: 186477615
Centisome position: 92.68
GC content: 62.47
Gene sequence:
>2286_bases ATGGACGAACAACTGAAGCAAAGCGCTCTCGCATATCACCAGAATCCGAAGCCTGGCAAGATTTCGGTCACCCCGACCAA GCCGCTTTCGAACCAGCTGGACCTGTCGCTGGCATATTCGCCGGGTGTCGCGGCGGCGTGCATGGCCATCTACGACGAAC CGCTCGACGCGCAAAAGTACACCTCGCGCGGCAACCTGGTTGGCGTGATCACGAACGGCACGGCTGTGCTGGGCCTTGGC AACATCGGGCCGCTCGCCGCGAAGCCGGTGATGGAAGGCAAGGGCTGTCTCTTCAAGAAATTTGCCGGCATCGACGTGTT CGATATCGAACTAAGCGAGTCGGATCCCGACAAGCTCGTCGAAGCGATCGCGATGCTGGAGCCGACGCTCGGCGGCATCA ATCTCGAAGACATCAAGGCGCCCGAATGCTTCTACATCGAAAAGAAGCTGCGCGAGCGCATGAAGATCCCCGTTTTCCAC GACGATCAGCACGGTACGGCGATCATCGCCTCGGCGGCGATTCTCAACGGGCTGAAGGTGGTCGGCAAGAAGCTGGAAGA CATCAAGCTGGTGTGCTCGGGCGCGGGTGCCGCGGCCATCGCGTGTCTGGACCTGCTCGTGCATCTGGGCCTGAAGAAGT CGAACACGCTGGTGGTCGATTCGAAGGGCGTAATCTACGAAGGCCGCGGAAATCTTGACGCGTCGAAAGAGCGCTACCAG GCGAGCACCGACGCGCGCACACTCGGCGACGCAATGCACGGCTGCGACGTGTTCCTCGGCTGTTCGAGCGCTGGCGTGCT GAAGCCGGAAATGGTCACGACGATGGCCGACAAACCGCTGATTCTCGCGCTTGCGAACCCCGAGCCGGAAATCCGCCCGG AAGAAGCGAAGAAGGTGCGTCCGGATGCGATCATCGCGACGGGCCGTTCGGACTATCCGAACCAGGTCAACAACGTGCTG TGCTTCCCGTTCATCTTCCGCGGCGCGCTGGACGTGGGCGCGACGACGATCACGGAAGAGATGAAGCTCGCGTGCGTGCG CGCGATCGCCGAACTTGCGGAAGAAACCGATCAGGGCGATGAAGTCGCGAAGGCGTACGAAGGCCACTCGCTCGAATTCG GCCCCGATTACCTGATTCCGAAGCCTTTCGACCCGCGTCTGATCATCAAGATCGCGCCCGCCGTCGCACAAGCCGCGATG GATTCGGGCGTCGCCACGCGTCCGATTCAGGACATGGACGCGTATCGCGAGCAACTCGGTGCGACCGTCTACCGCACGGG CATGGTGATGCGCCCCGTGTTCGCGGCAGCGAAGGCGCAACCGGCGCGCATCGTGTTCGCGGAAGGCGAAGACGAGCGCG TGCTGCGCGCGGCGCAATTCGTGCTGCTCGAGAAGATCGCAAAGCCTATTCTCGTCGGCCGTCCGAGCGTGATTGAGATG CGTCTGAAGAAGATGGGCTCGAAGCTCAAGTGCGGCGAGGATGTCGAGATCGTCAATCCGGAAGACGATCCGCGCTATCA GAAGAGCTGGCAGGCGTATCACGAGATCGGCGCGCGCGAAGGCGTGACGCCGGAAGTCGCGAAGGCCGCGATGCGCAAGT TCAACACGCTGATCGGCGCGATTCTCGTGCATCTCGGCGACGCGGACGGCATGATCTGCGGTCTGATCGATACCTATCAC GAGCATCTGAAATTCGTCGAGCAGGTGCTGGGCAAGGCCGCGAATGTCGACAACTTCGCCGCGATGAACCTGCTGATGCT GCCGGGCCGCAACCTGTTCATCAGCGACACCTACGTCAACGAAGTGCCGACGGCCGAACAGCTCGCCGACATGACGATTC TCGCCGCGCGCGAAATCGAAAAGTTCGGCATCGTGCCGAAGGTCGCGCTGCTGTCTAACTCGAACTTCGGCAGCATTCCT TCGTCCTCGGCGGCCCGCATGGCGCAGGCGCGCAAACTGATCGCCGCGCGCGCACCGCATCTCGAAGTGGACGGCGAAAT GCACGGCGACGCGGCGCTGTCGGAAGCGGTGCGCAAGGCAGCATTCCCCGGCACGACGCTGACGGGCGAAGCGAACCTGC TGATCATGCCGAACGTCGAAGCGGCAAACATCACCTACAACCTGCTGAAGATGATCGGCGGCGAAGGCGTGACTGTGGGT CCCTTCCTGCTCGGCGCTGCGAAGCCGGTGCACATCCTGACGCCGGCTGCGACCGTGCGCCGGATCATCAACATGACGGC TGTCGCTTCGGCGAACGCCAGCGTGGATCGTCAGGCCGCGAAGTGA
Upstream 100 bases:
>100_bases CGCCCGCGAGAATCGCCGCCGTCGAGCATCCCGTCGACATTGGCCAGCGCAGCACGTGACATTGAGCCGGGCCCAATTAT TAACGTCTCGCAGGTTAAAA
Downstream 100 bases:
>100_bases GCGTGCCTCCGGCGCGATGACGTGAAAAAGGGCACCGCAAGGCGCCCTTTTTCTTTGCCACAACCAACGGCGCTATGCCA CGTGCCGCTCGGCGCCACCC
Product: malic enzyme
Products: NA
Alternate protein names: NADP-ME [H]
Number of amino acids: Translated: 761; Mature: 761
Protein sequence:
>761_residues MDEQLKQSALAYHQNPKPGKISVTPTKPLSNQLDLSLAYSPGVAAACMAIYDEPLDAQKYTSRGNLVGVITNGTAVLGLG NIGPLAAKPVMEGKGCLFKKFAGIDVFDIELSESDPDKLVEAIAMLEPTLGGINLEDIKAPECFYIEKKLRERMKIPVFH DDQHGTAIIASAAILNGLKVVGKKLEDIKLVCSGAGAAAIACLDLLVHLGLKKSNTLVVDSKGVIYEGRGNLDASKERYQ ASTDARTLGDAMHGCDVFLGCSSAGVLKPEMVTTMADKPLILALANPEPEIRPEEAKKVRPDAIIATGRSDYPNQVNNVL CFPFIFRGALDVGATTITEEMKLACVRAIAELAEETDQGDEVAKAYEGHSLEFGPDYLIPKPFDPRLIIKIAPAVAQAAM DSGVATRPIQDMDAYREQLGATVYRTGMVMRPVFAAAKAQPARIVFAEGEDERVLRAAQFVLLEKIAKPILVGRPSVIEM RLKKMGSKLKCGEDVEIVNPEDDPRYQKSWQAYHEIGAREGVTPEVAKAAMRKFNTLIGAILVHLGDADGMICGLIDTYH EHLKFVEQVLGKAANVDNFAAMNLLMLPGRNLFISDTYVNEVPTAEQLADMTILAAREIEKFGIVPKVALLSNSNFGSIP SSSAARMAQARKLIAARAPHLEVDGEMHGDAALSEAVRKAAFPGTTLTGEANLLIMPNVEAANITYNLLKMIGGEGVTVG PFLLGAAKPVHILTPAATVRRIINMTAVASANASVDRQAAK
Sequences:
>Translated_761_residues MDEQLKQSALAYHQNPKPGKISVTPTKPLSNQLDLSLAYSPGVAAACMAIYDEPLDAQKYTSRGNLVGVITNGTAVLGLG NIGPLAAKPVMEGKGCLFKKFAGIDVFDIELSESDPDKLVEAIAMLEPTLGGINLEDIKAPECFYIEKKLRERMKIPVFH DDQHGTAIIASAAILNGLKVVGKKLEDIKLVCSGAGAAAIACLDLLVHLGLKKSNTLVVDSKGVIYEGRGNLDASKERYQ ASTDARTLGDAMHGCDVFLGCSSAGVLKPEMVTTMADKPLILALANPEPEIRPEEAKKVRPDAIIATGRSDYPNQVNNVL CFPFIFRGALDVGATTITEEMKLACVRAIAELAEETDQGDEVAKAYEGHSLEFGPDYLIPKPFDPRLIIKIAPAVAQAAM DSGVATRPIQDMDAYREQLGATVYRTGMVMRPVFAAAKAQPARIVFAEGEDERVLRAAQFVLLEKIAKPILVGRPSVIEM RLKKMGSKLKCGEDVEIVNPEDDPRYQKSWQAYHEIGAREGVTPEVAKAAMRKFNTLIGAILVHLGDADGMICGLIDTYH EHLKFVEQVLGKAANVDNFAAMNLLMLPGRNLFISDTYVNEVPTAEQLADMTILAAREIEKFGIVPKVALLSNSNFGSIP SSSAARMAQARKLIAARAPHLEVDGEMHGDAALSEAVRKAAFPGTTLTGEANLLIMPNVEAANITYNLLKMIGGEGVTVG PFLLGAAKPVHILTPAATVRRIINMTAVASANASVDRQAAK >Mature_761_residues MDEQLKQSALAYHQNPKPGKISVTPTKPLSNQLDLSLAYSPGVAAACMAIYDEPLDAQKYTSRGNLVGVITNGTAVLGLG NIGPLAAKPVMEGKGCLFKKFAGIDVFDIELSESDPDKLVEAIAMLEPTLGGINLEDIKAPECFYIEKKLRERMKIPVFH DDQHGTAIIASAAILNGLKVVGKKLEDIKLVCSGAGAAAIACLDLLVHLGLKKSNTLVVDSKGVIYEGRGNLDASKERYQ ASTDARTLGDAMHGCDVFLGCSSAGVLKPEMVTTMADKPLILALANPEPEIRPEEAKKVRPDAIIATGRSDYPNQVNNVL CFPFIFRGALDVGATTITEEMKLACVRAIAELAEETDQGDEVAKAYEGHSLEFGPDYLIPKPFDPRLIIKIAPAVAQAAM DSGVATRPIQDMDAYREQLGATVYRTGMVMRPVFAAAKAQPARIVFAEGEDERVLRAAQFVLLEKIAKPILVGRPSVIEM RLKKMGSKLKCGEDVEIVNPEDDPRYQKSWQAYHEIGAREGVTPEVAKAAMRKFNTLIGAILVHLGDADGMICGLIDTYH EHLKFVEQVLGKAANVDNFAAMNLLMLPGRNLFISDTYVNEVPTAEQLADMTILAAREIEKFGIVPKVALLSNSNFGSIP SSSAARMAQARKLIAARAPHLEVDGEMHGDAALSEAVRKAAFPGTTLTGEANLLIMPNVEAANITYNLLKMIGGEGVTVG PFLLGAAKPVHILTPAATVRRIINMTAVASANASVDRQAAK
Specific function: Unknown
COG id: COG0281
COG function: function code C; Malic enzyme
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the phosphate acetyltransferase and butyryltransferase family [H]
Homologues:
Organism=Homo sapiens, GI4505143, Length=343, Percent_Identity=27.6967930029155, Blast_Score=87, Evalue=5e-17, Organism=Homo sapiens, GI62420882, Length=348, Percent_Identity=27.0114942528736, Blast_Score=81, Evalue=4e-15, Organism=Homo sapiens, GI62420880, Length=348, Percent_Identity=27.0114942528736, Blast_Score=81, Evalue=4e-15, Organism=Homo sapiens, GI239049447, Length=348, Percent_Identity=27.0114942528736, Blast_Score=81, Evalue=4e-15, Organism=Homo sapiens, GI4505145, Length=350, Percent_Identity=26, Blast_Score=67, Evalue=7e-11, Organism=Escherichia coli, GI1788806, Length=756, Percent_Identity=63.3597883597884, Blast_Score=974, Evalue=0.0, Organism=Escherichia coli, GI1788800, Length=328, Percent_Identity=31.4024390243902, Blast_Score=137, Evalue=2e-33, Organism=Escherichia coli, GI1788635, Length=347, Percent_Identity=29.6829971181556, Blast_Score=135, Evalue=9e-33, Organism=Escherichia coli, GI87081919, Length=411, Percent_Identity=22.1411192214112, Blast_Score=69, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6322823, Length=271, Percent_Identity=28.4132841328413, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI281362674, Length=404, Percent_Identity=27.4752475247525, Blast_Score=99, Evalue=2e-20, Organism=Drosophila melanogaster, GI21356279, Length=404, Percent_Identity=27.4752475247525, Blast_Score=98, Evalue=2e-20, Organism=Drosophila melanogaster, GI281362672, Length=404, Percent_Identity=27.4752475247525, Blast_Score=98, Evalue=2e-20, Organism=Drosophila melanogaster, GI24646388, Length=350, Percent_Identity=28.8571428571429, Blast_Score=83, Evalue=7e-16, Organism=Drosophila melanogaster, GI24646386, Length=350, Percent_Identity=28.8571428571429, Blast_Score=83, Evalue=7e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015884 - InterPro: IPR012301 - InterPro: IPR012302 - InterPro: IPR012188 - InterPro: IPR016040 - InterPro: IPR002505 [H]
Pfam domain/function: PF00390 malic; PF03949 Malic_M; PF01515 PTA_PTB [H]
EC number: =1.1.1.40 [H]
Molecular weight: Translated: 81609; Mature: 81609
Theoretical pI: Translated: 5.98; Mature: 5.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDEQLKQSALAYHQNPKPGKISVTPTKPLSNQLDLSLAYSPGVAAACMAIYDEPLDAQKY CCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCHHHH TSRGNLVGVITNGTAVLGLGNIGPLAAKPVMEGKGCLFKKFAGIDVFDIELSESDPDKLV CCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCEEEEEEECCCCHHHHH EAIAMLEPTLGGINLEDIKAPECFYIEKKLRERMKIPVFHDDQHGTAIIASAAILNGLKV HHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHH VGKKLEDIKLVCSGAGAAAIACLDLLVHLGLKKSNTLVVDSKGVIYEGRGNLDASKERYQ HHHHHHHEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCCHHHHH ASTDARTLGDAMHGCDVFLGCSSAGVLKPEMVTTMADKPLILALANPEPEIRPEEAKKVR HHCHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCHHHHHCC PDAIIATGRSDYPNQVNNVLCFPFIFRGALDVGATTITEEMKLACVRAIAELAEETDQGD CCEEEECCCCCCCHHHCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCH EVAKAYEGHSLEFGPDYLIPKPFDPRLIIKIAPAVAQAAMDSGVATRPIQDMDAYREQLG HHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHCCCCCCCHHHHHHHHHHHC ATVYRTGMVMRPVFAAAKAQPARIVFAEGEDERVLRAAQFVLLEKIAKPILVGRPSVIEM CHHHHCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH RLKKMGSKLKCGEDVEIVNPEDDPRYQKSWQAYHEIGAREGVTPEVAKAAMRKFNTLIGA HHHHCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH ILVHLGDADGMICGLIDTYHEHLKFVEQVLGKAANVDNFAAMNLLMLPGRNLFISDTYVN HHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEECCCCEEEECCCCC EVPTAEQLADMTILAAREIEKFGIVPKVALLSNSNFGSIPSSSAARMAQARKLIAARAPH CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC LEVDGEMHGDAALSEAVRKAAFPGTTLTGEANLLIMPNVEAANITYNLLKMIGGEGVTVG EEECCCCCCHHHHHHHHHHHCCCCCEECCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEH PFLLGAAKPVHILTPAATVRRIINMTAVASANASVDRQAAK HHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCHHCCC >Mature Secondary Structure MDEQLKQSALAYHQNPKPGKISVTPTKPLSNQLDLSLAYSPGVAAACMAIYDEPLDAQKY CCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCHHHH TSRGNLVGVITNGTAVLGLGNIGPLAAKPVMEGKGCLFKKFAGIDVFDIELSESDPDKLV CCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCEEEEEEECCCCHHHHH EAIAMLEPTLGGINLEDIKAPECFYIEKKLRERMKIPVFHDDQHGTAIIASAAILNGLKV HHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHH VGKKLEDIKLVCSGAGAAAIACLDLLVHLGLKKSNTLVVDSKGVIYEGRGNLDASKERYQ HHHHHHHEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCCHHHHH ASTDARTLGDAMHGCDVFLGCSSAGVLKPEMVTTMADKPLILALANPEPEIRPEEAKKVR HHCHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCHHHHHCC PDAIIATGRSDYPNQVNNVLCFPFIFRGALDVGATTITEEMKLACVRAIAELAEETDQGD CCEEEECCCCCCCHHHCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCH EVAKAYEGHSLEFGPDYLIPKPFDPRLIIKIAPAVAQAAMDSGVATRPIQDMDAYREQLG HHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHCCCCCCCHHHHHHHHHHHC ATVYRTGMVMRPVFAAAKAQPARIVFAEGEDERVLRAAQFVLLEKIAKPILVGRPSVIEM CHHHHCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH RLKKMGSKLKCGEDVEIVNPEDDPRYQKSWQAYHEIGAREGVTPEVAKAAMRKFNTLIGA HHHHCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH ILVHLGDADGMICGLIDTYHEHLKFVEQVLGKAANVDNFAAMNLLMLPGRNLFISDTYVN HHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEECCCCEEEECCCCC EVPTAEQLADMTILAAREIEKFGIVPKVALLSNSNFGSIPSSSAARMAQARKLIAARAPH CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC LEVDGEMHGDAALSEAVRKAAFPGTTLTGEANLLIMPNVEAANITYNLLKMIGGEGVTVG EEECCCCCCHHHHHHHHHHHCCCCCEECCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEH PFLLGAAKPVHILTPAATVRRIINMTAVASANASVDRQAAK HHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503; 36376 [H]