| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
Click here to switch to the map view.
The map label for this gene is 186477537
Identifier: 186477537
GI number: 186477537
Start: 3141588
End: 3142295
Strand: Reverse
Name: 186477537
Synonym: Bphy_2789
Alternate gene names: NA
Gene position: 3142295-3141588 (Counterclockwise)
Preceding gene: 186477540
Following gene: 186477536
Centisome position: 90.32
GC content: 62.71
Gene sequence:
>708_bases ATGGCACGGCTTGCACGTCTTTATGTCCCCGACCAGCCGCAGCACGTGATCCTGCGCGGACTCGACCAGCAGCCCGCTTT CGTCGACGACCAGGATTACGAGCTGTTCATCGATTGCCTGAAGGCGGCTTCACGCGATCACCATCTGTCCGTGCATGCAT ACGCGCTGATGCCAGGCGCGGTGCAACTGCTCGTCACGCCCACCGACGAATCGAGCCTGCCGAAAGCGATGCAGGCTGTC GGACGGCGCTACGTTGCGCACTTCAATCGCCGTTACTCGCGACGCGGCACCTTATGGGAAGGCCGCTATCGCGCGACGGT CATCGAAGGCGAGAAGTACTTCCTGCTGGCGAGCCGCGTGGTTGAGTTGTCGCCTGTGCGCAACCAGCTGGTGAGCGCGC CGGAAGACTATCGATGGTCGAGCTATCGGCATCACATCGGGTTGACCTTGGACAGCTTGATCACCGACCATCGTTTGTAC TGGTCATTGGGCAATACGCCGTTCGAACGTCAGCGCGCATACCGCGAACTGTGCGAGCAGCCGCTCGACGAACGCGAGAC CAATCAGCTTCAACAGGCCACGCTGAAGGGCTGGGTGCTGGGCAGCGACTCATATCGGGAGTGGGCGGCGCGGGCGGCGA ACCGGCGCGTATCGCCGTTGCCGAGAGGTCGGCCGCGCAAGGTGCGCGAGACGCCGCAAACGCAATAA
Upstream 100 bases:
>100_bases TTCATGCGGTTTCCGGCAGACCCGCATGGCGCGTAAGGCCGCGCCGGCACAGTTTTTCGGACCTTCGGGTATGTACCAAC GCGACTTTGGATAATCCAGC
Downstream 100 bases:
>100_bases AGTCTCTTGCAATCAAAGGTTTGATGGCTGCATCCAAAAGAAAACGGCATCCCTGCATGCCGTTTTGTTTTGTCGGTAAT TGATATGGAACCAATTAATT
Product: hypothetical protein
Products: NA
Alternate protein names: Transposase And Inactivated Derivatives; Conserved Domain Protein; Transposase Of ISGbem_B; Transposase Family Protein; Transposase And Inactivated Derivatives Protein; Transposase-Like Protein; Transposase Or Inactivated Derivative; Methionine-R-Sulfoxide Reductase; Transposase Domain-Containing Protein
Number of amino acids: Translated: 235; Mature: 234
Protein sequence:
>235_residues MARLARLYVPDQPQHVILRGLDQQPAFVDDQDYELFIDCLKAASRDHHLSVHAYALMPGAVQLLVTPTDESSLPKAMQAV GRRYVAHFNRRYSRRGTLWEGRYRATVIEGEKYFLLASRVVELSPVRNQLVSAPEDYRWSSYRHHIGLTLDSLITDHRLY WSLGNTPFERQRAYRELCEQPLDERETNQLQQATLKGWVLGSDSYREWAARAANRRVSPLPRGRPRKVRETPQTQ
Sequences:
>Translated_235_residues MARLARLYVPDQPQHVILRGLDQQPAFVDDQDYELFIDCLKAASRDHHLSVHAYALMPGAVQLLVTPTDESSLPKAMQAV GRRYVAHFNRRYSRRGTLWEGRYRATVIEGEKYFLLASRVVELSPVRNQLVSAPEDYRWSSYRHHIGLTLDSLITDHRLY WSLGNTPFERQRAYRELCEQPLDERETNQLQQATLKGWVLGSDSYREWAARAANRRVSPLPRGRPRKVRETPQTQ >Mature_234_residues ARLARLYVPDQPQHVILRGLDQQPAFVDDQDYELFIDCLKAASRDHHLSVHAYALMPGAVQLLVTPTDESSLPKAMQAVG RRYVAHFNRRYSRRGTLWEGRYRATVIEGEKYFLLASRVVELSPVRNQLVSAPEDYRWSSYRHHIGLTLDSLITDHRLYW SLGNTPFERQRAYRELCEQPLDERETNQLQQATLKGWVLGSDSYREWAARAANRRVSPLPRGRPRKVRETPQTQ
Specific function: Unknown
COG id: COG1943
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27341; Mature: 27210
Theoretical pI: Translated: 9.75; Mature: 9.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARLARLYVPDQPQHVILRGLDQQPAFVDDQDYELFIDCLKAASRDHHLSVHAYALMPGA CCCCEEECCCCCCHHHHEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCE VQLLVTPTDESSLPKAMQAVGRRYVAHFNRRYSRRGTLWEGRYRATVIEGEKYFLLASRV EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEEEECCCEEEEHHHHH VELSPVRNQLVSAPEDYRWSSYRHHIGLTLDSLITDHRLYWSLGNTPFERQRAYRELCEQ HHHHHHHHHHHCCCCCCCCCCHHHECCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHHHC PLDERETNQLQQATLKGWVLGSDSYREWAARAANRRVSPLPRGRPRKVRETPQTQ CCCHHHHHHHHHHHHHHEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure ARLARLYVPDQPQHVILRGLDQQPAFVDDQDYELFIDCLKAASRDHHLSVHAYALMPGA CCCEEECCCCCCHHHHEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCE VQLLVTPTDESSLPKAMQAVGRRYVAHFNRRYSRRGTLWEGRYRATVIEGEKYFLLASRV EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEEEECCCEEEEHHHHH VELSPVRNQLVSAPEDYRWSSYRHHIGLTLDSLITDHRLYWSLGNTPFERQRAYRELCEQ HHHHHHHHHHHCCCCCCCCCCHHHECCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHHHC PLDERETNQLQQATLKGWVLGSDSYREWAARAANRRVSPLPRGRPRKVRETPQTQ CCCHHHHHHHHHHHHHHEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA